Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.
Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments.


BACKGROUND
Genoscape is an open-source software freely available from the Genoscape webpage (http://www.pasteur.fr/recherche/unites/Gim/genoscape/). Installation instructions and tutorial can also be found at this URL.
Clément-Ziza
Mathieu
M
Biotechnology Center, TU Dresden, Dresden, Germany. Mathieu.clement-ziza@biotec.tu-dresden.de
Malabat
Christophe
C
Weber
Christian
C
Moszer
Ivan
I
Aittokallio
Tero
T
Letondal
Catherine
C
Rousseau
Sandrine
S
D019295:Computational Biology / Q000379:methods*; D015870:Gene Expression; D020869:Gene Expression Profiling / Q000379:methods; D023281:Genomics; D016571:Neural Networks, Computer; D012984:Software