Sequence analysis of morbillivirus CD150 receptor-Signaling Lymphocyte Activation Molecule (SLAM) of different animal species.
Signaling Lymphocyte Activation Molecule-SLAM (CD150) molecule has been reported as a putative receptor for most morbilliviruses for their respective host species. In this study, we determined the complete nucleotide sequence of the gene coding for the morbillivirus receptor-SLAM from the four species, namely, goat (Capra hircus), sheep (Ovis aries), Indian cattle (Bos indicus), and buffalo (Bubalus bubalis). The nucleotide (nt) open reading frame sequence of SLAM gene in all the four species studied was 1017 nucleotides in length encoding a polypeptide of 339 amino acids (aa), similar to Bos taurus, but different from canine, human, marmoset, and mouse SLAM, which were 1029, 1008, 1011, and 1032 nts, respectively, in length, and coding for 343, 336, 337, and 344 aa, respectively. Sequence analysis revealed 96.3-98.5% and 92.9-96.8% identities among the four species at the nt and aa level, respectively. Sequence diversity at aa level between various species revealed that the critical functional region of SLAM protein among different species is relatively conserved, thereby facilitating this molecule to act as a receptor for morbillivirus. Phylogenetic relationship based on the aa sequences of SLAM protein revealed that caprine, ovine, cattle, and buffalo fall under a defined cluster but caprine SLAM is more closely related to ovine, followed by bovine.
Sarkar
J
J
National Morbillivirus Referral Laboratory, Division of Virology, Indian Veterinary Research Institute, Uttarakhand, India.
Balamurugan
V
V
Sen
A
A
Saravanan
P
P
Sahay
B
B
Rajak
K K
KK
Rasool
T J
TJ
Bhanuprakash
V
V
Singh
R K
RK
D000818:Animals; D015703:Antigens, CD / Q000235:genetics*; D002020:Buffaloes; D002417:Cattle; D016000:Cluster Analysis; D006041:Goats; D008969:Molecular Sequence Data; D018103:Morbillivirus; D010802:Phylogeny; D011110:Polymorphism, Genetic; D011956:Receptors, Cell Surface / Q000235:genetics*; D011991:Receptors, Virus / Q000235:genetics*; D017422:Sequence Analysis, DNA; D017386:Sequence Homology, Amino Acid; D012756:Sheep; D000071177:Signaling Lymphocytic Activation Molecule Family Member 1
D015703:Antigens, CD; D011956:Receptors, Cell Surface; D011991:Receptors, Virus; C000604059:SLAMF1 protein, human; D000071177:Signaling Lymphocytic Activation Molecule Family Member 1