title: The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi.
abstract: BACKGROUND
  Chronic chagasic cardiomyopathy is a debilitating and frequently fatal outcome of human infection with the protozoan parasite, Trypanosoma cruzi. Microarray analysis of gene expression during the T. cruzi life-cycle could be a valuable means of identifying drug and vaccine targets based on their appropriate expression patterns, but results from previous microarray studies in T. cruzi and related kinetoplastid parasites have suggested that the transcript abundances of most genes in these organisms do not vary significantly between life-cycle stages.
  
  
  RESULTS
  In this study, we used whole genome, oligonucleotide microarrays to globally determine the extent to which T. cruzi regulates mRNA relative abundances over the course of its complete life-cycle. In contrast to previous microarray studies in kinetoplastids, we observed that relative transcript abundances for over 50% of the genes detected on the T. cruzi microarrays were significantly regulated during the T. cruzi life-cycle. The significant regulation of 25 of these genes was confirmed by quantitative reverse-transcriptase PCR (qRT-PCR). The T. cruzi transcriptome also mirrored published protein expression data for several functional groups. Among the differentially regulated genes were members of paralog clusters, nearly 10% of which showed divergent expression patterns between cluster members.
  
  
  CONCLUSIONS
  Taken together, these data support the conclusion that transcript abundance is an important level of gene expression regulation in T. cruzi. Thus, microarray analysis is a valuable screening tool for identifying stage-regulated T. cruzi genes and metabolic pathways.
authors: Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia 30602, USA. tminning@uga.edu
authors: Todd A
authors: TA
authors: Minning
authors: D Brent
authors: DB
authors: Weatherly
authors: James
authors: J
authors: Atwood
authors: Ron
authors: R
authors: Orlando
authors: Rick L
authors: RL
authors: Tarleton
mesh_terms: D000818:Animals; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D018503:Genome, Protozoan; D008018:Life Cycle Stages; D020411:Oligonucleotide Array Sequence Analysis; D040901:Proteomics; D015800:Protozoan Proteins / Q000235:genetics / Q000378:metabolism; D012333:RNA, Messenger / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D014158:Transcription, Genetic; D014349:Trypanosoma cruzi / Q000235:genetics* / Q000254:growth & development* / Q000378:metabolism
chemical_list: D015800:Protozoan Proteins; D012333:RNA, Messenger