Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil.
This study characterized strain WP01(T), a Gram-staining-negative, rod-shaped, aerobic bacterium isolated from a polycyclic aromatic hydrocarbon-contaminated soil in New Zealand. Strain WP01(T) shared many characteristics of the genus Sphingobium: the predominant respiratory quinone (89 %) was ubiquinone with ten isoprene units (Q-10); the major fatty acids were C(18 : 1)omega7c, C(16 : 1)omega7c, C(16 : 0) and C(14 : 0) 2-OH; spermidine was the major polyamine; the DNA G+C content was 63.8 mol%; and the Sphingobium-specific 16S rRNA signatures were conserved. A point of difference from other species of the genus Sphingobium was that strain WP01(T) reduced nitrate to nitrite. The polar lipid pattern consisted of the predominant compounds diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and sphingoglycolipids. 16S rRNA gene sequence analysis showed that, amongst the recognized species of the genus Sphingobium, strain WP01(T) was most similar to Sphingobium yanoikuyae GIFU 9882(T) and Sphingobium amiense YT(T) (>97 % 16S rRNA gene sequence similarities). The low DNA-DNA relatedness values between strain WP01(T) and S. yanoikuyae GIFU 9882(T) (46.6 %) and S. amiense DSM 16289(T) (25.6 %) indicated no relatedness at the species level. On the basis of these characteristics, it is concluded that strain WP01(T) should be considered as representing a novel species within the genus Sphingobium, for which the name Sphingobium scionense sp. nov. is proposed. The type strain is WP01(T) (=DSM 19371(T)=ICMP 13533(T)).
Liang
Quanfeng
Q
State Key Laboratory of Microbial Technology, National Glycoengineering Research Center, Shandong University, Jinan, Shandong 250100, PR China.|Scion, Te Papa Tipu Innovation Park, Private Bag 3020, Rotorua, New Zealand.
Lloyd-Jones
Gareth
G
Scion, Te Papa Tipu Innovation Park, Private Bag 3020, Rotorua, New Zealand.
D001482:Base Composition; D001483:Base Sequence; D004269:DNA, Bacterial / Q000737:chemistry; D006841:Hydrocarbons, Aromatic / Q000378:metabolism*; D007220:Industrial Waste; D008969:Molecular Sequence Data; D009520:New Zealand; D010802:Phylogeny; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D012988:Soil Microbiology; D012989:Soil Pollutants / Q000378:metabolism*; D042301:Sphingomonadaceae / Q000145:classification* / Q000235:genetics / Q000378:metabolism*
D004269:DNA, Bacterial; D006841:Hydrocarbons, Aromatic; D007220:Industrial Waste; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S; D012989:Soil Pollutants