The chitinase and chitinase-like proteins: a review of genetic and functional studies in asthma and immune-mediated diseases.
OBJECTIVE
The present review provides an overview of the chitinase and chitinase-like proteins, chitotriosidase (CHIT1), YKL-40, and acid mammalian chitinase, and summarizes the genetic studies of asthma and immune-mediated diseases with polymorphisms in the genes encoding these proteins, CHIT1, CHI3L1, and CHIA, respectively.


RESULTS
Polymorphisms in the CHIT1, CHIA, and CHI3L1 genes influence chitotriosidase enzyme activity, acid mammalian chitinase activity, and YKL-40 levels, respectively. Regulatory SNPs in CHI3L1 were also associated with asthma, atopy, and immune-mediated diseases, and nonsynonymous SNPs in CHIA were associated with asthma. No CHIT1 polymorphisms, including a common nonfunctional 24-bp duplication allele, have been associated with asthma.


CONCLUSIONS
These genes represent novel asthma susceptibility genes. Variations in CHI3L1 and CHIA have been associated with asthma risk. Polymorphisms in CHIT1 have not yet been associated with asthma, but few studies have been reported. Given that chitotriosidase is the major chitinase in the airways and a common nonfunctional allele is present in many populations, additional studies of this gene are warranted. Lastly, studies of all three genes need to be conducted in populations of diverse ancestries.
Ober
Carole
C
Department of Human Genetics, The University of Chicago, Illinois 60636, USA. c-ober@genetics.uchicago.edu
Chupp
Geoffrey L
GL
D054392:Adipokines; D001249:Asthma / Q000201:enzymology* / Q000453:epidemiology / Q000235:genetics* / Q000276:immunology*; D000071451:Chitinase-3-Like Protein 1; D002688:Chitinases / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D020022:Genetic Predisposition to Disease; D005828:Genetics, Population; D006023:Glycoproteins / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D006596:Hexosaminidases / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D006801:Humans; D037102:Lectins / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D011110:Polymorphism, Genetic
D054392:Adipokines; C084533:CHI3L1 protein, human; D000071451:Chitinase-3-Like Protein 1; D006023:Glycoproteins; D037102:Lectins; D006596:Hexosaminidases; C086400:chitotriosidase; C499254:CHIA protein, human; D002688:Chitinases