title: Calculation of fluorine chemical shift tensors for the interpretation of oriented (19)F-NMR spectra of gramicidin A in membranes.
abstract: A semi-empirical method for the prediction of chemical shifts, based on bond polarization theory, has recently been introduced for (13)C. Here, we extended this approach to calculate the (19)F chemical shift tensors of fluorine bound to aromatic rings and in aliphatic CF(3) groups. For the necessary parametrization, ab initio chemical shift calculations were performed at the MP2 level for a set of fluorinated molecules including tryptophan. The bond polarization parameters obtained were used to calculate the (19)F chemical shift tensors for several crystalline molecules, and to reference the calculated values on a chemical shift scale relative to CFCl(3). As a first biophysical application, we examined the distribution of conformations of a (19)F-labeled tryptophan side chain in the membrane-bound ion channel peptide, gramicidin A. The fluorine chemical shift tensors were calculated from snapshots of a molecular dynamics simulation employing the (19)F-parametrized bond polarization theory. In this MD simulation, published (2)H quadrupolar and (15)N-(1)H dipolar couplings of the indole ring were used as orientational constraints to determine the conformational distribution of the 5F-Trp(13) side chain. These conformations were then used to interpret the spectra of (19)F-labeled gramicidin A in fluid and gel phase lipid bilayers.
authors: Karlsruhe Institute of Technology, Institute of Biological Interfaces (IBG-2), Forschungszentrum Karlsruhe, Karlsruhe, Germany. Urich.Sternberg@kit.edu
authors: Ulrich
authors: U
authors: Sternberg
authors: Marco
authors: M
authors: Klipfel
authors: Stephan L
authors: SL
authors: Grage
authors: Raiker
authors: R
authors: Witter
authors: Anne S
authors: AS
authors: Ulrich
mesh_terms: D002462:Cell Membrane / Q000737:chemistry*; D005461:Fluorine / Q000737:chemistry*; D006096:Gramicidin / Q000737:chemistry*; D008051:Lipid Bilayers / Q000737:chemistry; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D008968:Molecular Conformation; D011789:Quantum Theory; D013997:Time Factors; D014364:Tryptophan / Q000737:chemistry
chemical_list: D008051:Lipid Bilayers; D006096:Gramicidin; D005461:Fluorine; D014364:Tryptophan