title: Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.
abstract: Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments.
  
  
  BACKGROUND
  Genoscape is an open-source software freely available from the Genoscape webpage (http://www.pasteur.fr/recherche/unites/Gim/genoscape/). Installation instructions and tutorial can also be found at this URL.
authors: Biotechnology Center, TU Dresden, Dresden, Germany. Mathieu.clement-ziza@biotec.tu-dresden.de
authors: Mathieu
authors: M
authors: Clément-Ziza
authors: Christophe
authors: C
authors: Malabat
authors: Christian
authors: C
authors: Weber
authors: Ivan
authors: I
authors: Moszer
authors: Tero
authors: T
authors: Aittokallio
authors: Catherine
authors: C
authors: Letondal
authors: Sandrine
authors: S
authors: Rousseau
mesh_terms: D019295:Computational Biology / Q000379:methods*; D015870:Gene Expression; D020869:Gene Expression Profiling / Q000379:methods; D023281:Genomics; D016571:Neural Networks, Computer; D012984:Software