title: PCR-DGGE-based methodologies to assess diversity and dynamics of Aeromonas communities.
abstract: OBJECTIVE
  Aeromonas is ubiquitous in aquatic environments and may cause infectious diseases in fish and humans. However, reliable and specific methods to evaluate the diversity and dynamics of Aeromonas populations are currently unavailable. This study aimed to develop PCR-DGGE methodologies for culture-independent analysis of Aeromonas populations in water systems.
  
  
  RESULTS
  Three primer sets were designed to amplify selected sections of genes gyrB, rpoD and sodB from Aeromonas. Their specificity was confirmed by in silico analysis and by PCR on DNA from pure cultures. Estuarine water samples were analyzed by PCR-DGGE using those primers. DGGE patterns clearly clustered according to seasonal factors, and Aeromonas communities were surprisingly stable along a salinity gradient. Sequences of cloned amplicons affiliated to sequences belonging to seven Aeromonas species previously isolated from the same environment.
  
  
  CONCLUSIONS
  The three systems used showed to be useful to describe the diversity of Aeromonas communities. However, the combined use of more than one primer set is advisable.
  
  
  CONCLUSIONS
  The methods presented here can be applied to understand the natural pool of Aeromonas and also to monitor and control these bacteria in aquatic reservoirs.
authors: Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.
authors: V
authors: V
authors: Calhau
authors: M
authors: M
authors: Tacão
authors: F
authors: F
authors: Morgado
authors: A
authors: A
authors: Correia
authors: I
authors: I
authors: Henriques
mesh_terms: D000333:Aeromonas / Q000235:genetics*; D001483:Base Sequence; D016000:Cluster Analysis; D017931:DNA Primers; D004269:DNA, Bacterial / Q000235:genetics; D015180:Electrophoresis, Gel, Two-Dimensional / Q000379:methods*; D005798:Genes, Bacterial; D014644:Genetic Variation; D006801:Humans; D010802:Phylogeny; D016133:Polymerase Chain Reaction / Q000379:methods*; D011174:Portugal; D012621:Seasons; D014871:Water Microbiology
chemical_list: D017931:DNA Primers; D004269:DNA, Bacterial