ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.


METHODS
This package is implemented in R and available at the Bioconductor web site; the package contains a 'vignette' outlining typical work flows.
Morgan
Martin
M
Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. mtmorgan@fhcrc.org
Anders
Simon
S
Lawrence
Michael
M
Aboyoun
Patrick
P
Pagès
Hervé
H
Gentleman
Robert
R
D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020869:Gene Expression Profiling; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software