title: The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.
abstract: Traditional methods for bacterial cultivation recover only a small fraction of bacteria from all sorts of natural environments, and attempts have been made to improve the bacterial culturability. Here we describe the development of a cultivation method, based on the embedment of pure bacterial cultures in between two layers of agar. Plates containing either embedded Pseudomonas putida or Arthrobacter globiformis resulted in higher numbers of CFUs of soil bacteria (21% and 38%, respectively) after 833 h of incubation, compared to plates with no embedded strain. This indicates a stimulatory effect of the bacterial pure cultures on the cultivation of soil bacteria. Analysis of partial 16S rRNA gene sequences revealed a phylogenetical distribution of the soil isolates into 7 classes in 4 phyla. No difference was observed at the phylum or class level when comparing isolates grouped according to embedded strain. The number of isolates belonging to the same class as the embedded strain was reduced in comparison to that of plates with no embedded strain, indicating that intercellular signalling was unlikely to cause the observed stimulatory effect. Significantly higher fractions of isolates with less than 97% sequence homology to known sequenced isolates in GenBank were recovered from plates with embedded strains than from those without, which indicate a higher number of potential novel soil isolates. This approach for cultivation is therefore a feasible alternative or supplement to traditional cultivation on agar plates in order to enhance bacterial culturability.
authors.affiliation: Section of Microbiology, Department of Biology, University of Copenhagen, Denmark.
authors.forename: Mette
authors.initials: M
authors.lastname: Burmølle
authors.forename: Kaare
authors.initials: K
authors.lastname: Johnsen
authors.forename: Waleed
authors.initials: W
authors.lastname: Abu Al-Soud
authors.forename: Lars Hestbjerg
authors.initials: LH
authors.lastname: Hansen
authors.forename: Søren Johannes
authors.initials: SJ
authors.lastname: Sørensen
mesh_terms: D000362:Agar; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000254:growth & development* / Q000302:isolation & purification*; D001431:Bacteriological Techniques / Q000379:methods*; D044822:Biodiversity; D016000:Cluster Analysis; D015169:Colony Count, Microbial; D003470:Culture Media; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology
chemical_list: D003470:Culture Media; D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D000362:Agar