SnoopCGH: software for visualizing comparative genomic hybridization data.
Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.


METHODS
SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/
Almagro-Garcia
Jacob
J
Wellcome Trust Sanger Institute, Hinxton, The Weatherall Institute of Molecular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. jg10@sanger.ac.uk
Manske
Magnus
M
Carret
Celine
C
Campino
Susana
S
Auburn
Sarah
S
Macinnis
Bronwyn L
BL
Maslen
Gareth
G
Pain
Arnab
A
Newbold
Christopher I
CI
Kwiatkowski
Dominic P
DP
Clark
Taane G
TG
D055028:Comparative Genomic Hybridization / Q000295:instrumentation / Q000379:methods*; D019295:Computational Biology / Q000379:methods*; D003196:Computer Graphics; D020869:Gene Expression Profiling / Q000379:methods; D016678:Genome; D016680:Genome, Bacterial; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods; D010963:Plasmodium falciparum / Q000235:genetics; D012984:Software
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