A review of lipidomic technologies applicable to sphingolipidomics and their relevant applications.
Sphingolipidomics, a branch of lipidomics, focuses on the large-scale study of the cellular sphingolipidomes. In the current review, two main approaches for the analysis of cellular sphingolipidomes (i.e. LC-MS- or LC-MS/MS-based approach and shotgun lipidomics-based approach) are briefly discussed. Their advantages, some considerations of these methods, and recent applications of these approaches are summarized. It is the authors' sincere hope that this review article will add to the readers understanding of the advantages and limitations of each developed method for the analysis of a cellular sphingolipidome.
Han
Xianlin
X
Division of Bioorganic Chemistry and Molecular Pharmacology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, USA.
Jiang
Xuntian
X
Mol Genet Metab. 2008 Apr;93(4):437-43
18162427
Cell Mol Biol (Noisy-le-grand). 2003 Jul;49(5):779-87
14528915
J Lipid Res. 2004 Feb;45(2):281-6
14595000
FASEB J. 2006 Jun;20(8):1152-61
16770014
Anal Biochem. 2000 May 15;281(1):36-44
10847608
Cell Mol Biol (Noisy-le-grand). 2003 Jul;49(5):809-18
14528918
Yeast. 2006 Apr 30;23(6):465-77
16652392
Arch Pathol Lab Med. 2004 Dec;128(12):1337-45
15578876
Prostaglandins Other Lipid Mediat. 2005 Sep;77(1-4):15-22
16099387
J Biol Chem. 2004 Jun 18;279(25):26167-75
15078881
J Lipid Res. 2001 Dec;42(12):1959-68
11734568
Mol Genet Metab. 2007 Dec;92(4):336-45
17881272
Anal Chem. 2006 Sep 1;78(17):6202-14
16944903
Anal Biochem. 2005 Apr 1;339(1):129-36
15766719
Anal Chem. 2007 Jun 1;79(11):4083-93
17474710
J Lipid Res. 1999 Aug;40(8):1539-46
10428992
Lipids. 2007 Apr;42(3):275-90
17393232
Front Biosci. 2007 Jan 01;12:2750-60
17127277
Nat Rev Drug Discov. 2005 Jul;4(7):594-610
16052242
Anal Biochem. 2001 Aug 1;295(1):88-100
11476549
Methods Enzymol. 2007;433:175-91
17954235
J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jun 1;852(1-2):562-70
17368999
Front Biosci. 2007 Jan 01;12:2494-506
17127258
Anal Biochem. 2007 Dec 15;371(2):135-45
17920553
Annu Rev Anal Chem (Palo Alto Calif). 2008;1:357-96
20636083
J Lipid Res. 2005 Jul;46(7):1548-60
15834120
J Lipid Res. 2003 Nov;44(11):2209-16
12897185
Anal Chem. 2002 Mar 1;74(5):941-9
11924996
Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2339-44
9122196
Anal Biochem. 2005 May 1;340(1):113-22
15802137
Exp Biol Med (Maywood). 2007 Apr;232(4):471-2
17392481
J Biol Chem. 1966 Aug 25;241(16):3724-30
5916387
Biochim Biophys Acta. 2003 Nov 15;1634(3):61
14643793
J Lipid Res. 2006 Jul;47(7):1559-71
16639079
Prostaglandins Other Lipid Mediat. 2005 Sep;77(1-4):4-14
16099386
J Am Soc Mass Spectrom. 2006 Feb;17(2):264-74
16413201
Expert Rev Proteomics. 2005 Apr;2(2):253-64
15892569
J Lipid Res. 2002 Jul;43(7):1125-32
12091497
J Lipid Res. 2003 Jun;44(6):1071-9
12671038
Anal Biochem. 2002 Mar 15;302(2):199-212
11878798
J Mass Spectrom. 2006 Mar;41(3):372-89
16498600
Front Biosci. 2007 Jan 01;12:2568-79
17127263
Anal Chem. 2005 Apr 1;77(7):2166-75
15801751
Nat Rev Mol Cell Biol. 2003 May;4(5):397-407
12728273
J Lipid Res. 2004 Sep;45(9):1777-82
15210839
J Biol Chem. 2003 Mar 7;278(10):8043-51
12501252
J Biol Chem. 2002 Aug 30;277(35):31994-2002
12077151
Methods. 2005 Jun;36(2):207-24
15894491
J Neurochem. 2007 Apr;101(1):57-76
17241120
J Neurochem. 2007 Nov;103 Suppl 1:3-13
17986134
Biochim Biophys Acta. 2007 Apr;1768(4):923-40
17078925
Microbiol Mol Biol Rev. 2005 Jun;69(2):197-216
15944454
Curr Opin Mol Ther. 2007 Dec;9(6):586-91
18041669
Front Biosci. 2007 Jan 01;12:2601-15
17127266
J Lipid Res. 1970 Jan;11(1):23-30
4983716
Anal Biochem. 2004 Jul 15;330(2):317-31
15203339
EMBO Rep. 2004 Aug;5(8):777-82
15289826
Methods. 2006 Jun;39(2):82-91
16828308
J Lipid Res. 2006 Oct;47(10):2101-11
16902246
Mol Interv. 2004 Apr;4(2):86-96
15087482
Mass Spectrom Rev. 2005 May-Jun;24(3):367-412
15389848
Sci STKE. 2001 Jan 30;2001(67):pl1
11752637
Biochem J. 2008 Feb 15;410(1):81-92
17939778
Biochim Biophys Acta. 2006 Dec;1758(12):1864-84
17052686
J Mass Spectrom. 2001 Aug;36(8):849-65
11523084
Front Biosci. 2007 May 01;12:3203-46
17485294
Biochemistry. 2004 Dec 14;43(49):15584-94
15581371
Anal Chem. 2006 Jan 15;78(2):585-95
16408944
Anal Biochem. 2005 Jun 15;341(2):251-8
15907870
Rapid Commun Mass Spectrom. 2003;17(19):2168-76
14515314
Prostaglandins Other Lipid Mediat. 2005 Sep;77(1-4):35-45
16099389
Proc Natl Acad Sci U S A. 1994 Oct 25;91(22):10635-9
7938005