title: SnoopCGH: software for visualizing comparative genomic hybridization data.
abstract: Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.
  
  
  METHODS
  SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/
authors.affiliation: Wellcome Trust Sanger Institute, Hinxton, The Weatherall Institute of Molecular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. jg10@sanger.ac.uk
authors.forename: Jacob
authors.initials: J
authors.lastname: Almagro-Garcia
authors.forename: Magnus
authors.initials: M
authors.lastname: Manske
authors.forename: Celine
authors.initials: C
authors.lastname: Carret
authors.forename: Susana
authors.initials: S
authors.lastname: Campino
authors.forename: Sarah
authors.initials: S
authors.lastname: Auburn
authors.forename: Bronwyn L
authors.initials: BL
authors.lastname: Macinnis
authors.forename: Gareth
authors.initials: G
authors.lastname: Maslen
authors.forename: Arnab
authors.initials: A
authors.lastname: Pain
authors.forename: Christopher I
authors.initials: CI
authors.lastname: Newbold
authors.forename: Dominic P
authors.initials: DP
authors.lastname: Kwiatkowski
authors.forename: Taane G
authors.initials: TG
authors.lastname: Clark
mesh_terms: D055028:Comparative Genomic Hybridization / Q000295:instrumentation / Q000379:methods*; D019295:Computational Biology / Q000379:methods*; D003196:Computer Graphics; D020869:Gene Expression Profiling / Q000379:methods; D016678:Genome; D016680:Genome, Bacterial; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods; D010963:Plasmodium falciparum / Q000235:genetics; D012984:Software
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