Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean.
The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5'- and 3'-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.
Nam
Moon
M
Agricultural Microbiology Division, National Academy of Agricultural Science, RDA, Suwon, Korea.
Kim
Sang Mok
SM
Domier
Leslie L
LL
Koh
Serry
S
Moon
Jung Kyung
JK
Choi
Hong Soo
HS
Kim
Hong Gi
HG
Moon
Jae Sun
JS
Lee
Su-Heon
SH
D020413:3' Untranslated Regions / Q000235:genetics; D020121:5' Untranslated Regions / Q000235:genetics; D001483:Base Sequence; D019184:Carmovirus / Q000235:genetics*; D016679:Genome, Viral / Q000235:genetics; D008969:Molecular Sequence Data; D009029:Mosaic Viruses / Q000235:genetics; D010802:Phylogeny; D013025:Glycine max / Q000821:virology*
D020413:3' Untranslated Regions; D020121:5' Untranslated Regions