Establishing the mitochondrial DNA D-loop structure of Columba livia.
The complete mitochondrial DNA D-loop structure of pigeon (Columba livia) was established in this study. A strategy of amplifying three partial fragments of the D-loop and then combing the three fragments to cover the full length of the D-loop was adopted. Ten samples from pigeons were collected and were successfully amplified and sequenced. Repetitive sequences of a VNTR and an STR were both observed at the 3'-end of D-loop region. DNA sequence data revealed polymorphic sequences including indels, SNP, VNTR and STR within the D-loop. The size of the D-loop ranged from 1310 to 1327 bp from the initiation site of D-loop to the site immediately upstream of the repeat sequences depending upon the number of insertions or deletions. Each sample could be distinguished based on four genotyping procedures; being indels, SNPs, VNTRs and STRs. The polymorphic nature of the D-loop can be a valuable method for maternal identification and genetic linkage of pigeon in particular forensic science investigations.
Tsai
Li-Chin
LC
Department of Forensic Science, Central Police University, Kwei-San, Taoyuan, Taiwan, ROC.
Lee
James Chun-I
JC
Department of Forensic Medicine, College of Medicine, National Taiwan University, Taipei, Taiwan, ROC.|Institute of Forensic Medicine, Ministry of Justice, Taipei, Taiwan, ROC.
Liao
Shu-Ping
SP
Department of Forensic Science, Central Police University, Kwei-San, Taoyuan, Taiwan, ROC.
Weng
Lin-Hsiang
LH
Department of Forensic Science, Central Police University, Kwei-San, Taoyuan, Taiwan, ROC.
Linacre
Adrian
A
Centre for Forensic Science, Department of Pure & Applied Chemistry, WestCHEM, University of Strathclyde, Glasgow, UK.
Hsieh
Hsing-Mei
HM
Department of Forensic Science, Central Police University, Kwei-San, Taoyuan, Taiwan, ROC.
D000818:Animals; D001483:Base Sequence; D010856:Columbidae / Q000235:genetics*; D004272:DNA, Mitochondrial / Q000737:chemistry* / Q000235:genetics; D018598:Minisatellite Repeats; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D016133:Polymerase Chain Reaction / Q000379:methods; D020641:Polymorphism, Single Nucleotide; D017422:Sequence Analysis, DNA / Q000379:methods*
D004272:DNA, Mitochondrial
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