title: Single nucleotide polymorphism genomic arrays analysis of t(8;21) acute myeloid leukemia cells.
abstract: Translocation of chromosomes 8 and 21, t(8;21), resulting in the AML1-ETO fusion gene, is associated with acute myeloid leukemia. We searched for additional genomic abnormalities in this acute myeloid leukemia subtype by performing single nucleotide polymorphism genomic arrays (SNP-chip) analysis on 48 newly diagnosed cases. Thirty-two patients (67%) had a normal genome by SNP-chip analysis (Group A), and 16 patients (33%) had one or more genomic abnormalities including copy number changes or copy number neutral loss of heterozygosity (Group B). Two samples had copy number neutral loss of heterozygosity on chromosome 6p including the PIM1 gene; and one of these cases had E135K mutation of Pim1. Interestingly, 38% of Group B and only 13% of Group A samples had a KIT-D816 mutation, suggesting that genomic alterations are often associated with a KIT-D816 mutation. Importantly, prognostic analysis revealed that overall survival and event-free survival of individuals in Group B were significantly worse than those in Group A.
authors.affiliation: Department of Stem Cell Biology, Graduate School of Medical Science, Kanazawa University, 13-1 Takara-machi, Kanazawa, Ishikawa, Japan. tadayuki@staff.kanazawa-u.ac.jp
authors.forename: Tadayuki
authors.initials: T
authors.lastname: Akagi
authors.forename: Lee-Yung
authors.initials: LY
authors.lastname: Shih
authors.forename: Seishi
authors.initials: S
authors.lastname: Ogawa
authors.forename: Joachim
authors.initials: J
authors.lastname: Gerss
authors.forename: Stephen R
authors.initials: SR
authors.lastname: Moore
authors.forename: Rhona
authors.initials: R
authors.lastname: Schreck
authors.forename: Norihiko
authors.initials: N
authors.lastname: Kawamata
authors.forename: Der-Cherng
authors.initials: DC
authors.lastname: Liang
authors.forename: Masashi
authors.initials: M
authors.lastname: Sanada
authors.forename: Yasuhito
authors.initials: Y
authors.lastname: Nannya
authors.forename: Stefan
authors.initials: S
authors.lastname: Deneberg
authors.forename: Vasilios
authors.initials: V
authors.lastname: Zachariadis
authors.forename: Ann
authors.initials: A
authors.lastname: Nordgren
authors.forename: Jee Hoon
authors.initials: JH
authors.lastname: Song
authors.forename: Martin
authors.initials: M
authors.lastname: Dugas
authors.forename: Sören
authors.initials: S
authors.lastname: Lehmann
authors.forename: H Phillip
authors.initials: HP
authors.lastname: Koeffler
mesh_terms: D002891:Chromosomes, Human, Pair 21 / Q000235:genetics*; D002898:Chromosomes, Human, Pair 8 / Q000235:genetics*; D050676:Core Binding Factor Alpha 2 Subunit / Q000235:genetics; D018572:Disease-Free Survival; D015894:Genome, Human; D006801:Humans; D015470:Leukemia, Myeloid, Acute / Q000235:genetics* / Q000401:mortality; D019656:Loss of Heterozygosity / Q000235:genetics; D020125:Mutation, Missense; D020411:Oligonucleotide Array Sequence Analysis; D015514:Oncogene Proteins, Fusion / Q000235:genetics; D020641:Polymorphism, Single Nucleotide; D019009:Proto-Oncogene Proteins c-kit / Q000235:genetics; D051573:Proto-Oncogene Proteins c-pim-1 / Q000235:genetics; D000075142:RUNX1 Translocation Partner 1 Protein; D015996:Survival Rate; D014178:Translocation, Genetic; D014407:Tumor Cells, Cultured
chemical_list: C107844:AML1-ETO fusion protein, human; D050676:Core Binding Factor Alpha 2 Subunit; D015514:Oncogene Proteins, Fusion; D000075142:RUNX1 Translocation Partner 1 Protein; D019009:Proto-Oncogene Proteins c-kit; C496634:PIM1 protein, human; D051573:Proto-Oncogene Proteins c-pim-1