title: Electron delocalization and charge transfer in polypeptide chains.
abstract: In this work, the electron structure and charge-transfer mechanism in polypeptide chains are investigated according to natural bond orbitals (NBO) analysis at the level of B3LYP/6-311++G**. The results indicate that the delocalization of electrons between neighboring peptide subgroups can occur in two opposite directions, and the delocalization effect in the direction from the carboxyl end to the amino end has an obvious advantage. As a result of a strong hyperconjugative interaction, the lowest unoccupied NBO of the peptide subgroup, pi*C-O, has significant delocalization to neighboring subgroups, and the energies of these NBOs decrease from the carboxyl end to the amino end. The formation of intramolecular O...H-N type hydrogen bonds also helps to delocalize the electron from the carboxyl end to the amino end. Thus, the electron will flow to the amino end. The superexchange mechanism is suggested in the electron-transfer process.
authors.affiliation: Institute of Theoretical Chemistry, Shandong University, Jinan 250100 Shandong, China.
authors.forename: Ye-Fei
authors.initials: YF
authors.lastname: Wang
authors.forename: Zhang-Yu
authors.initials: ZY
authors.lastname: Yu
authors.forename: Jian
authors.initials: J
authors.lastname: Wu
authors.forename: Cheng-Bu
authors.initials: CB
authors.lastname: Liu
mesh_terms: D019295:Computational Biology; D004247:DNA / Q000737:chemistry; D004249:DNA Damage; D045647:DNA Glycosylases / Q000737:chemistry*; D004260:DNA Repair; D004579:Electron Transport; D004583:Electrons; D006860:Hydrogen Bonding; D008956:Models, Chemical; D008958:Models, Molecular; D009842:Oligopeptides / Q000737:chemistry*; D010084:Oxidation-Reduction; D011487:Protein Conformation
chemical_list: D009842:Oligopeptides; D004247:DNA; D045647:DNA Glycosylases; C061738:mutY adenine glycosylase