Molecular characterization of bacteriophages for microbial source tracking in Korea.
We investigated coliphages from various fecal sources, including humans and animals, for microbial source tracking in South Korea. Both somatic and F+-specific coliphages were isolated from 43 fecal samples from farms, wild animal habitats, and human wastewater plants. Somatic coliphages were more prevalent and abundant than F+ coliphages in all of the tested fecal samples. We further characterized 311 F+ coliphage isolates using RNase sensitivity assays, PCR and reverse transcription-PCR, and nucleic acid sequencing. Phylogenetic analyses were performed based on the partial nucleic acid sequences of 311 F+ coliphages from various sources. F+ RNA coliphages were most prevalent among geese (95%) and were least prevalent in cows (5%). Among the genogroups of F+ RNA coliphages, most F+ coliphages isolated from animal fecal sources belonged to either group I or group IV, and most from human wastewater sources were in group II or III. Some of the group I coliphages were present in both human and animal source samples. F+ RNA coliphages isolated from various sources were divided into two main clusters. All F+ RNA coliphages isolated from human wastewater were grouped with Qbeta-like phages, while phages isolated from most animal sources were grouped with MS2-like phages. UniFrac significance statistical analyses revealed significant differences between human and animal bacteriophages. In the principal coordinate analysis (PCoA), F+ RNA coliphages isolated from human waste were distinctively separate from those isolated from other animal sources. However, F+ DNA coliphages were not significantly different or separate in the PCoA. These results demonstrate that proper analysis of F+ RNA coliphages can effectively distinguish fecal sources.
Lee
Jung Eun
JE
Institute of Health and Environment, Department of Environmental Health, School of Public Health, Seoul National University, 28 Yeongeon-dong, Chongro-gu, Seoul 110-799, South Korea.
Lim
Mi Young
MY
Kim
Sei Yoon
SY
Lee
Sunghee
S
Lee
Heetae
H
Oh
Hyun-Myung
HM
Hur
Hor-Gil
HG
Ko
Gwangpyo
G
D000818:Animals; D001434:Bacteriophage Typing; D003090:Coliphages / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D004279:DNA, Viral / Q000235:genetics; D004784:Environmental Monitoring / Q000379:methods*; D005243:Feces / Q000821:virology*; D006801:Humans; D007723:Korea; D008969:Molecular Sequence Data; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012367:RNA, Viral / Q000235:genetics; D056910:Republic of Korea; D012260:Ribonucleases / Q000378:metabolism; D012722:Sewage / Q000821:virology; D014871:Water Microbiology
D004279:DNA, Viral; D012367:RNA, Viral; D012722:Sewage; D012260:Ribonucleases