Evaluation of an ontological resource for pharmacovigilance.
In this work, we present a methodology for evaluating an ontology designed in a previous study to describe adverse drug reactions. We evaluate it in term of its fitness for grouping cases in pharmacovigilance. We define as gold standard the Standardized MedDRA Queries (SMQs) developed manually to group terms representing similar medical conditions. We perform an automatic search in the ontology in order to retrieve concepts related to the medical conditions. An optimal query is built for each medical condition. The evaluation relies on the comparison between the terms in the SMQ and the terms subsumed by the query. The result is quantified by sensitivity and specificity. We applied this methodology for 24 SMQs and we obtain a mean sensitivity of 0.82. This work allows validating the semantic resource and provides, in perspective, tools to maintain the ontology while the knowledge is evolving.
Jaulent
Marie-Christine
MC
INSERM, UMR_S 872, eq.20 Paris, France. marie-christine.jaulent@spim.jussieu.fr
Alecu
Iulian
I
D019992:Databases as Topic; D064420:Drug-Related Side Effects and Adverse Reactions; D039061:Systematized Nomenclature of Medicine