title: Synchronized oscillation of the segmentation clock gene in vertebrate development.
abstract: In vertebrate somitogenesis, "segmentation clock" genes (her in zebrafish, hes in mouse, and hairy in chick) show oscillation, synchronized over nearby cells through intercellular interaction. In zebrafish, neighboring cells interact by Delta-Notch signaling to realize synchronization. Under Delta-Notch, however, a cell with a high expression of the segmentation clock gene tends to suppress its expression in adjacent cells, which might produce spatial heterogeneity instead of synchronized oscillation. Here we studied the conditions under which pre-somitic mesoderm cells show synchronized oscillation of gene expression mathematically. We adopted a model that explicitly considers the kinetics of the mRNA and proteins of the segmentation clock gene and cell-cell interaction via Delta-Notch signaling. From statistical study of a model with randomly generated parameters, we revealed how the likelihood that the system generates stable synchronized oscillation depends on the rate of each reaction in the gene-protein kinetics.
authors.affiliation: Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, 812-8581, Japan. uriu@bio-math10.biology.kyushu-u.ac.jp.
authors.forename: Koichiro
authors.initials: K
authors.lastname: Uriu
authors.affiliation: Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, 812-8581, Japan.|PRESTO Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan.
authors.forename: Yoshihiro
authors.initials: Y
authors.lastname: Morishita
authors.affiliation: Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, 812-8581, Japan.
authors.forename: Yoh
authors.initials: Y
authors.lastname: Iwasa
mesh_terms: D000465:Algorithms; D000818:Animals; D051792:Basic Helix-Loop-Helix Proteins / Q000235:genetics / Q000378:metabolism; D001683:Biological Clocks / Q000235:genetics*; D002450:Cell Communication; D003198:Computer Simulation; D025461:Feedback, Physiological; D018507:Gene Expression Regulation, Developmental; D047908:Intracellular Signaling Peptides and Proteins; D008565:Membrane Proteins / Q000235:genetics / Q000378:metabolism; D008648:Mesoderm / Q000166:cytology / Q000196:embryology; D008957:Models, Genetic; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D051880:Receptors, Notch / Q000235:genetics / Q000378:metabolism; D015398:Signal Transduction; D019170:Somites / Q000196:embryology; D014714:Vertebrates / Q000196:embryology* / Q000235:genetics*; D015027:Zebrafish / Q000196:embryology; D029961:Zebrafish Proteins / Q000235:genetics / Q000378:metabolism
chemical_list: D051792:Basic Helix-Loop-Helix Proteins; D047908:Intracellular Signaling Peptides and Proteins; D008565:Membrane Proteins; D012333:RNA, Messenger; D051880:Receptors, Notch; D029961:Zebrafish Proteins; C064045:delta protein; C491619:her1 protein, zebrafish