MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore.
During cell division/mitosis, a specific subset of proteins is spatially and temporally assembled into protein super complexes in three distinct regions, i.e. centrosome/spindle pole, kinetochore/centromere and midbody/cleavage furrow/phragmoplast/bud neck, and modulates cell division process faithfully. Although many experimental efforts have been carried out to investigate the characteristics of these proteins, no integrated database was available. Here, we present the MiCroKit database (http://microkit.biocuckoo.org) of proteins that localize in midbody, centrosome and/or kinetochore. We collected into the MiCroKit database experimentally verified microkit proteins from the scientific literature that have unambiguous supportive evidence for subcellular localization under fluorescent microscope. The current version of MiCroKit 3.0 provides detailed information for 1489 microkit proteins from seven model organisms, including Saccharomyces cerevisiae, Schizasaccharomyces pombe, Caenorhabditis elegans, Drosophila melanogaster, Xenopus laevis, Mus musculus and Homo sapiens. Moreover, the orthologous information was provided for these microkit proteins, and could be a useful resource for further experimental identification. The online service of MiCroKit database was implemented in PHP + MySQL + JavaScript, while the local packages were developed in JAVA 1.5 (J2SE 5.0).
Ren
Jian
J
Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science & Technology of China, Hefei 230027, China.
Liu
Zexian
Z
Gao
Xinjiao
X
Jin
Changjiang
C
Ye
Mingliang
M
Zou
Hanfa
H
Wen
Longping
L
Zhang
Zhaolei
Z
Xue
Yu
Y
Yao
Xuebiao
X
D000465:Algorithms; D000818:Animals; D018385:Centrosome / Q000737:chemistry*; D019295:Computational Biology / Q000379:methods* / Q000639:trends; D030541:Databases, Genetic; D030562:Databases, Protein; D016681:Genome, Fungal; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D018386:Kinetochores / Q000737:chemistry*; D008856:Microscopy, Fluorescence / Q000379:methods; D012984:Software; D008941:Spindle Apparatus; D014584:User-Computer Interface