Characterization of arrangement and expression of the beta-2 microglobulin locus in the sandbar and nurse shark.
Beta 2 microglobulin (beta2m) is an essential subunit of major histocompatibility complex (MHC) type I molecules. In this report, beta2m cDNAs were identified and sequenced from sandbar shark spleen cDNA library. Sandbar shark beta2m gene encodes one amino acid less than most teleost beta2m genes, and 3 amino acids less than mammal beta2m genes. Although sandbar shark beta2m protein contains one beta sheet less than that of human in the predicted protein structure, the overall structure of beta2m proteins is conserved during evolution. Germline gene for the beta2m in sandbar and nurse shark is present as a single locus. It contains three exons and two introns. CpG sites are evenly distributed in the shark beta2m loci. Several DNA repeat elements were also identified in the shark beta2m loci. Sequence analysis suggests that the beta2m locus is not linked to the MHC I loci in the shark genome.
Chen
Hao
H
Department of Immunobiology, College of Medicine, University of Arizona, Tucson, AZ 85719, USA.
Kshirsagar
Sarika
S
Jensen
Ingvill
I
Lau
Kevin
K
Simonson
Caitlin
C
Schluter
Samuel F
SF
D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D018076:DNA, Complementary / Q000235:genetics; D005786:Gene Expression Regulation; D056426:Genetic Loci; D006801:Humans; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010802:Phylogeny; D017434:Protein Structure, Tertiary; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid; D012754:Sharks / Q000235:genetics* / Q000276:immunology; D001613:beta 2-Microglobulin / Q000737:chemistry / Q000235:genetics* / Q000276:immunology
D018076:DNA, Complementary; D001613:beta 2-Microglobulin