Electron transfers in proteins: investigations with a modified through-bond coupling model.
By integrating the merits of previous models, a modified through-bond coupling (MTBC) model is proposed in this work and shows obvious improvement compared with previous models. With the MTBC model, the dominant electron coupling pathways in the polypeptide chains were identified, where the N-H bonds were found to be essential to the electron couplings. The local structures of peptides and proteins were finely characterized by the electron couplings and decay factors since they are structure sensitive. The neighboring carbonyl O-O distances are qualitatively correlated with the decay factors, and the deviations from the transconfigurations will weaken the coupling interactions. When the two amino acids being studied are not close in sequence, the couplings through hydrogen bonds are probably the main pathway because the electron transfers in this way save many steps, albeit the decay factor is less than that of per bond, consistent with the classical electron-tunneling model developed by Beratan [Science 252, 1285 (1991)]. It was found that the MTBC model can be effectively extended to study the electron transfers in complex biological systems with the combination of the fragment approach, which takes into account the contributions of key hydrogen bonds.
Institute of Theoretical Chemistry, Shandong University, Jinan, 250100 Shandong, People's Republic of China.
Ye-Fei
YF
Wang
Gang
G
Yang
Cheng-Bu
CB
Liu
D045647:DNA Glycosylases / Q000737:chemistry / Q000378:metabolism; D004579:Electron Transport; D006838:Hydrocarbons / Q000737:chemistry / Q000378:metabolism; D008958:Models, Molecular; D010455:Peptides / Q000378:metabolism; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism*
D006838:Hydrocarbons; D010455:Peptides; D011506:Proteins; D045647:DNA Glycosylases