title: Collaborative trial validation studies of real-time PCR-based GMO screening methods for detection of the bar gene and the ctp2-cp4epsps construct.
abstract: Polymerase Chain Reaction (PCR)-based screening methods targeting genetic elements commonly used in genetically modified (GM) plants are important tools for the detection of GM materials in food, feed, and seed samples. To expand and harmonize the screening capability of enforcement laboratories, the German Federal Office of Consumer Protection and Food Safety conducted collaborative trials for interlaboratory validation of real-time PCR methods for detection of the phosphinothricin acetyltransferase (bar) gene from Streptomyces hygroscopicus and a construct containing the 5-enolpyruvylshikimate-3-phosphate synthase gene from Agrobacterium tumefaciens sp. strain CP4 (ctp2-cp4epsps), respectively. To assess the limit of detection, precision, and accuracy of the methods, laboratories had to analyze two sets of 18 coded genomic DNA samples of events LLRice62 and MS8 with the bar method and NK603 and GT73 with the ctp2-cp4epsps method at analyte levels of 0, 0.02, and 0.1% GM content, respectively. In addition, standard DNAs were provided to the laboratories to generate calibration curves for copy number quantification of the bar and ctp2-cp4epsps target sequences present in the test samples. The study design and the results obtained are discussed with respect to the difficult issue of developing general guidelines and concepts for the collaborative trial validation of qualitative PCR screening methods.
authors.affiliation: Federal Office of Consumer Protection and Food Safety, Berlin, Germany. lutz.grohmann@bvl.bund.de
authors.forename: Lutz
authors.initials: L
authors.lastname: Grohmann
authors.forename: Claudia
authors.initials: C
authors.lastname: Brünen-Nieweler
authors.forename: Anne
authors.initials: A
authors.lastname: Nemeth
authors.forename: Hans-Ulrich
authors.initials: HU
authors.lastname: Waiblinger
mesh_terms: D051229:3-Phosphoshikimate 1-Carboxyvinyltransferase / Q000235:genetics*; D000123:Acetyltransferases / Q000235:genetics*; D016960:Agrobacterium tumefaciens / Q000201:enzymology / Q000235:genetics; D027461:Beta vulgaris / Q000235:genetics; D018744:DNA, Plant / Q000032:analysis*; D030821:Plants, Genetically Modified / Q000235:genetics*; D016133:Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D013025:Glycine max / Q000235:genetics; D013302:Streptomyces / Q000201:enzymology / Q000235:genetics; D003313:Zea mays / Q000235:genetics
chemical_list: D018744:DNA, Plant; D000123:Acetyltransferases; C056243:phosphinothricin N-acetyltransferase; D051229:3-Phosphoshikimate 1-Carboxyvinyltransferase