New tools at the Candida Genome Database: biochemical pathways and full-text literature search.
The Candida Genome Database (CGD, http://www.candidagenome.org/) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Herein, we describe two recently added features, Candida Biochemical Pathways and the Textpresso full-text literature search tool. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism. Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies.
Skrzypek
Marek S
MS
Department of Genetics, Stanford University Medical School, Stanford, CA 94305-5120, USA.
Arnaud
Martha B
MB
Costanzo
Maria C
MC
Inglis
Diane O
DO
Shah
Prachi
P
Binkley
Gail
G
Miyasato
Stuart R
SR
Sherlock
Gavin
G
D002176:Candida albicans / Q000235:genetics*; D019295:Computational Biology / Q000379:methods* / Q000639:trends; D004271:DNA, Fungal / Q000235:genetics; D030541:Databases, Genetic; D030561:Databases, Nucleic Acid; D030562:Databases, Protein; D005800:Genes, Fungal; D016681:Genome, Fungal; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D016366:Open Reading Frames; D017434:Protein Structure, Tertiary; D012984:Software; D014584:User-Computer Interface
D004271:DNA, Fungal