title: Addressable bipartite molecular hook (ABMH): immobilized hairpin probes with sensitivity below 50 fM.
abstract: Sensitivity and specificity of nucleic acid binding probes immobilized on solid supports are essential features of microarrays. Whereas conventional biochips apply nonquenched linear probes (cDNA, oligonucleotides), hairpin structures containing a fluorophore-quencher system comprise important prerequisites required for ideal transcriptional probes. We describe here the generation of addressable bipartite molecular hook (ABMH) probes and the characterization of their performance analyzing biological and clinical samples, also in comparison to linear oligonucleotide arrays. ABMH can be immobilized subsequent to reaction with the target sequence or the reaction carried out directly with the immobilized probe; target sequences are recognized with excellent sensitivity, specificity, and a detection limit below 50 fM. Due to excellent sensitivity and specificity, ABMH represent ideal candidates for the nonamplified microarray-based detection of low abundance nucleic acids, e.g., required in diagnostic assays.
authors.affiliation: SIRS-Lab GmbH, Winzerlaer Stra 2, D-07745 Jena, Germany.
authors.forename: Julien B P
authors.initials: JB
authors.lastname: Landré
authors.forename: Markus F
authors.initials: MF
authors.lastname: Blaess
authors.forename: Matthias
authors.initials: M
authors.lastname: Kohl
authors.forename: Tina
authors.initials: T
authors.lastname: Schlicksbier
authors.forename: Andriy
authors.initials: A
authors.lastname: Ruryk
authors.forename: Ralf
authors.initials: R
authors.lastname: Kinscherf
authors.forename: Ralf A
authors.initials: RA
authors.lastname: Claus
authors.forename: Albin
authors.initials: A
authors.lastname: Hermetter
authors.forename: Matthias
authors.initials: M
authors.lastname: Keller
authors.forename: Michael
authors.initials: M
authors.lastname: Bauer
authors.forename: Hans-Peter
authors.initials: HP
authors.lastname: Deigner
mesh_terms: D045744:Cell Line, Tumor; D006801:Humans; D057230:Limit of Detection; D015341:Nucleic Acid Probes / Q000737:chemistry*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012680:Sensitivity and Specificity; D047992:TNF Receptor-Associated Factor 2 / Q000032:analysis / Q000235:genetics
chemical_list: D015341:Nucleic Acid Probes; D047992:TNF Receptor-Associated Factor 2