Structural adaptation of serine hydroxymethyltransferase to low temperatures.
Structural adaptation of serine hydroxymethyltransferase (SHMT), a pyridoxal-5'-phosphate dependent enzyme that catalyzes the reversible conversion of l-serine and tetrahydropteroylglutamate to glycine and 5,10-methylene-tetrahydropteroylglutamate, synthesized by microorganisms adapted to low temperatures has been analyzed using a comparative approach. The variations of amino acid properties and frequencies among three temperature populations (psychrophilic, mesophilic, hyper- and thermophilic) of SHMT sequences have been tested. SHMTs display a general increase of polarity specially in the core, a more negatively charged surface, and enhanced flexibility. Subunit interface is more hydrophilic and less compact. Electrostatic potential of the tetrahydrofolate binding site has been compared. The enzyme from Psychromonas ingrahamii, the organism with the lowest adaptation temperatures, displayed the most positive potential. In general, the property variations show a coherent opposite trend in the hyperthermophilic population: in particular, increase of hydrophobicity, packing and decrease of flexibility was observed.
Siglioccolo
Alessandro
A
Dipartimento di Scienze Biochimiche A. Rossi Fanelli, Sapienza Università di Roma, Italy.
Bossa
Francesco
F
Pascarella
Stefano
S
D000595:Amino Acid Sequence; D000596:Amino Acids; D001419:Bacteria / Q000201:enzymology*; D001665:Binding Sites; D012696:Glycine Hydroxymethyltransferase / Q000737:chemistry*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D017433:Protein Structure, Secondary; D016415:Sequence Alignment; D040681:Structural Homology, Protein; D013696:Temperature; D013763:Tetrahydrofolates / Q000378:metabolism
D000596:Amino Acids; D013763:Tetrahydrofolates; C030371:5,6,7,8-tetrahydrofolic acid; D012696:Glycine Hydroxymethyltransferase