An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota.
Root exudates influence the surrounding soil microbial community, and recent evidence demonstrates the involvement of ATP-binding cassette (ABC) transporters in root secretion of phytochemicals. In this study, we examined effects of seven Arabidopsis (Arabidopsis thaliana) ABC transporter mutants on the microbial community in native soils. After two generations, only the Arabidopsis abcg30 (Atpdr2) mutant had significantly altered both the fungal and bacterial communities compared with the wild type using automated ribosomal intergenic spacer analysis. Similarly, root exudate profiles differed between the mutants; however, the largest variance from the wild type (Columbia-0) was observed in abcg30, which showed increased phenolics and decreased sugars. In support of this biochemical observation, whole-genome expression analyses of abcg30 roots revealed that some genes involved in biosynthesis and transport of secondary metabolites were up-regulated, while some sugar transporters were down-regulated compared with genome expression in wild-type roots. Microbial taxa associated with Columbia-0 and abcg30 cultured soils determined by pyrosequencing revealed that exudates from abcg30 cultivated a microbial community with a relatively greater abundance of potentially beneficial bacteria (i.e. plant-growth-promoting rhizobacteria and nitrogen fixers) and were specifically enriched in bacteria involved in heavy metal remediation. In summary, we report how a single gene mutation from a functional plant mutant influences the surrounding community of soil organisms, showing that genes are not only important for intrinsic plant physiology but also for the interactions with the surrounding community of organisms as well.
Badri
Dayakar V
DV
Center for Rhizosphere Biology and Department of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, Colorado 80523, USA.
Quintana
Naira
N
El Kassis
Elie G
EG
Kim
Hye Kyong
HK
Choi
Young Hae
YH
Sugiyama
Akifumi
A
Verpoorte
Robert
R
Martinoia
Enrico
E
Manter
Daniel K
DK
Vivanco
Jorge M
JM
D018528:ATP-Binding Cassette Transporters / Q000235:genetics* / Q000378:metabolism; D017360:Arabidopsis / Q000235:genetics* / Q000382:microbiology; D029681:Arabidopsis Proteins / Q000235:genetics*; D001419:Bacteria / Q000145:classification / Q000235:genetics; D044822:Biodiversity; D001688:Biological Products / Q000378:metabolism*; D005658:Fungi / Q000145:classification / Q000235:genetics; D018745:Genome, Plant / Q000235:genetics; D009154:Mutation / Q000235:genetics*; D053147:Plant Exudates / Q000737:chemistry / Q000378:metabolism; D018517:Plant Roots / Q000737:chemistry*; D025341:Principal Component Analysis; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology
D018528:ATP-Binding Cassette Transporters; D029681:Arabidopsis Proteins; C547218:Atpdr2 protein, Arabidopsis; D001688:Biological Products; D053147:Plant Exudates