Biosynthesis of the proteasome inhibitor syringolin A: the ureido group joining two amino acids originates from bicarbonate.
BACKGROUND
Syringolin A, an important virulence factor in the interaction of the phytopathogenic bacterium Pseudomonas syringae pv. syringae B728a with its host plant Phaseolus vulgaris (bean), was recently shown to irreversibly inhibit eukaryotic proteasomes by a novel mechanism. Syringolin A is synthesized by a mixed non-ribosomal peptide synthetase/polyketide synthetase and consists of a tripeptide part including a twelve-membered ring with an N-terminal valine that is joined to a second valine via a very unusual ureido group. Analysis of sequence and architecture of the syringolin A synthetase gene cluster with the five open reading frames sylA-sylE allowed to formulate a biosynthesis model that explained all structural features of the tripeptide part of syringolin A but left the biosynthesis of the unusual ureido group unaccounted for.


RESULTS
We have cloned a 22 kb genomic fragment containing the sylA-sylE gene cluster but no other complete gene into the broad host range cosmid pLAFR3. Transfer of the recombinant cosmid into Pseudomonas putida and P. syringae pv. syringae SM was sufficient to direct the biosynthesis of bona fide syringolin A in these heterologous organisms whose genomes do not contain homologous genes. NMR analysis of syringolin A isolated from cultures grown in the presence of NaH(13)CO(3) revealed preferential (13)C-labeling at the ureido carbonyl position.


CONCLUSIONS
The results show that no additional syringolin A-specific genes were needed for the biosynthesis of the enigmatic ureido group joining two amino acids. They reveal the source of the ureido carbonyl group to be bicarbonate/carbon dioxide, which we hypothesize is incorporated by carbamylation of valine mediated by the sylC gene product(s). A similar mechanism may also play a role in the biosynthesis of other ureido-group-containing NRPS products known largely from cyanobacteria.
Ramel
Christina
C
Institute of Plant Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland. cramel@botinst.uzh.ch
Tobler
Micha
M
Meyer
Martin
M
Bigler
Laurent
L
Ebert
Marc-Olivier
MO
Schellenberg
Barbara
B
Dudler
Robert
R
D000596:Amino Acids / Q000737:chemistry*; D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism; D001639:Bicarbonates / Q000737:chemistry; D010456:Peptides, Cyclic / Q000096:biosynthesis* / Q000737:chemistry* / Q000235:genetics; D061988:Proteasome Inhibitors; D011549:Pseudomonas / Q000235:genetics / Q000378:metabolism; D044224:Pseudomonas syringae / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*
D000596:Amino Acids; D001426:Bacterial Proteins; D001639:Bicarbonates; D010456:Peptides, Cyclic; D061988:Proteasome Inhibitors; C407267:syringolin A