Evolution of stability in a cold-active enzyme elicits specificity relaxation and highlights substrate-related effects on temperature adaptation.
Molecular aspects of thermal adaptation of proteins were studied by following the co-evolution of temperature dependence, conformational stability, and substrate specificity in a cold-active lipase modified via directed evolution. We found that the evolution of kinetic stability was accompanied by a relaxation in substrate specificity. Moreover, temperature dependence and selectivity turned out to be mutually dependent. While the wild-type protein was strictly specific for short-chain triglycerides (C4) in the temperature range 10-50 degrees C and displayed highest activity in the cold, its stabilized variant was able to accept C8 and C12 molecules and its selectivity was temperature dependent. We could not detect any improvement in the overall structural robustness of the mutant when the structure was challenged by temperature or chemical denaturants. There is, however, strong evidence for local stabilization effects in the active-site region provided by two independent approaches. Differential scanning fluorimetry revealed that the exposure of hydrophobic patches (as the active site is) precedes denaturation, and molecular dynamics simulations confirmed that stability was obtained by restriction of the mobility of the lid, a flexible structure that regulates the access to the enzyme active site and influences its stability. This reduction of lid movements is suggested to be accompanied by a concomitant increase in the mobility of other protein regions, thus accounting for the observed broadening of substrate specificity.
Department of Biotechnology and Biosciences, State University of Milano-Bicocca, Piazza della Scienza 2, I-20126 Milano, Italy.
Pietro
P
Gatti-Lafranconi
Antonino
A
Natalello
Sascha
S
Rehm
Silvia Maria
SM
Doglia
Jürgen
J
Pleiss
Marina
M
Lotti
D000222:Adaptation, Physiological / Q000187:drug effects; D002942:Circular Dichroism; D003080:Cold Temperature; D019020:Directed Molecular Evolution; D004795:Enzyme Stability / Q000187:drug effects; D005453:Fluorescence; D007700:Kinetics; D007783:Lactones / Q000494:pharmacology; D008049:Lipase / Q000737:chemistry / Q000378:metabolism*; D056004:Molecular Dynamics Simulation; D050505:Mutant Proteins / Q000737:chemistry; D000077403:Orlistat; D018583:Pliability / Q000187:drug effects; D017510:Protein Folding / Q000187:drug effects; D017433:Protein Structure, Secondary; D044206:Pseudomonas fragi / Q000201:enzymology*; D040681:Structural Homology, Protein; D013379:Substrate Specificity / Q000187:drug effects; D013816:Thermodynamics; D044366:Transition Temperature
D007783:Lactones; D050505:Mutant Proteins; D000077403:Orlistat; D008049:Lipase