title: Nanogravimetric and voltammetric DNA-hybridization biosensors for studies of DNA damage by common toxicants and pollutants.
abstract: Electrochemical and nanogravimetric DNA-hybridization biosensors have been developed for sensing single mismatches in the probe-target ssDNA sequences. The voltammetric transduction was achieved by coupling ferrocene moiety to streptavidin linked to biotinylated tDNA. The mass-related frequency transduction was implemented by immobilizing the sensory pDNA on a gold-coated quartz crystal piezoresonators oscillating in the 10MHz band. The high sensitivity of these sensors enabled us to study DNA damage caused by representative toxicants and environmental pollutants, including Cr(VI) species, common pesticides and herbicides. We have found that the sensor responds rapidly to any damage caused by Cr(VI) species, with more severe DNA damage observed for Cr(2)O(7)(2-) and for CrO(4)(2-) in the presence of H(2)O(2) as compared to CrO(4)(2-) alone. All herbicides and pesticides examined caused DNA damage or structural alterations leading to the double-helix unwinding. Among these compounds, paraoxon-ethyl and atrazine caused the fastest and most severe damage to DNA. The physico-chemical mechanism of damaging interactions between toxicants and DNA has been proposed. The methodology of testing voltammetric and nanogravimetric DNA-hybridization biosensors developed in this work can be employed as a simple protocol to obtain rapid comparative data concerning DNA damage caused by herbicide, pesticides and other toxic pollutants. The DNA-hybridization biosensor can, therefore, be utilized as a rapid screening device for classifying environmental pollutants and to evaluate DNA damage induced by these compounds.
authors.affiliation: Department of Chemistry, State University of New York at Potsdam, 13676, USA.
authors.forename: Anna M
authors.initials: AM
authors.lastname: Nowicka
authors.forename: Agata
authors.initials: A
authors.lastname: Kowalczyk
authors.forename: Zbigniew
authors.initials: Z
authors.lastname: Stojek
authors.forename: Maria
authors.initials: M
authors.lastname: Hepel
mesh_terms: D001280:Atrazine / Q000633:toxicity; D015374:Biosensing Techniques; D001710:Biotin / Q000031:analogs & derivatives; D002857:Chromium / Q000633:toxicity; D004247:DNA / Q000032:analysis / Q000187:drug effects*; D004249:DNA Damage; D004563:Electrochemistry / Q000379:methods; D004785:Environmental Pollutants; D005296:Ferrous Compounds / Q000138:chemical synthesis; D006540:Herbicides / Q000633:toxicity; D000075163:Metallocenes; D009153:Mutagens; D036103:Nanotechnology / Q000379:methods; D009693:Nucleic Acid Hybridization; D010261:Paraoxon / Q000031:analogs & derivatives / Q000633:toxicity; D010575:Pesticides / Q000633:toxicity; D019809:Streptavidin / Q000138:chemical synthesis
chemical_list: D004785:Environmental Pollutants; D005296:Ferrous Compounds; D006540:Herbicides; D000075163:Metallocenes; D009153:Mutagens; D010575:Pesticides; C121104:ethylparaoxon; D002857:Chromium; D001710:Biotin; D004247:DNA; D019809:Streptavidin; D010261:Paraoxon; D001280:Atrazine; C004998:ferrocene