title: TransLISA, a novel quantitative, nonradioactive assay for transcription factor DNA-binding analyses.
abstract: Transcription factors are DNA-binding proteins that regulate key biological processes. Their interactions with DNA are commonly analyzed with gel-based electrophoretic mobility shift assay (EMSA) using radioactively labeled probes. Within various fields of research, there exists an increasing demand to develop assays with faster sample throughput combined with improved sensitivity, increased analytical range, and precise quantification. Here, we describe the development and performance of a 384-well plate immunoassay, termed TransLISA, which is a novel homogeneous assay for rapid and sensitive quantification of the DNA-binding activity of transcription factors in cell and tissue lysates. TransLISA outperforms EMSAs, because it eliminates the need to use radioactive chemicals and allows fast and precise quantification of DNA-binding activity of transcription factors from large number of samples simultaneously. We have used TransLISA to demonstrate the DNA-binding activity of heat shock factor 1, representing a well-known model of inductive transcriptional regulatory responses, but the method is easily adaptable for the study of any transcription factor. Thus, TransLISA can replace EMSAs and may be used in various applications and research fields where quantitative, cost-effective and large-scale measurements of the DNA-binding activity of transcription factors are required, including screening of responses in multiple treatments in cellular and molecular biology, evolutionary research, environmental monitoring, and drug discovery.
authors.affiliation: Centre of Excellence in Evolutionary Genetics and Physiology, Department of Biology, University of Turku, Finland. kristiina.vuori@utu.fi
authors.forename: Kristiina A
authors.initials: KA
authors.lastname: Vuori
authors.forename: Johanna K
authors.initials: JK
authors.lastname: Ahlskog
authors.forename: Lea
authors.initials: L
authors.lastname: Sistonen
authors.forename: Mikko
authors.initials: M
authors.lastname: Nikinmaa
mesh_terms: D000818:Animals; D001345:Autoradiography; D002478:Cells, Cultured; D004247:DNA / Q000378:metabolism*; D004268:DNA-Binding Proteins / Q000378:metabolism*; D024202:Electrophoretic Mobility Shift Assay; D006367:HeLa Cells; D006360:Heat-Shock Proteins / Q000032:analysis / Q000378:metabolism; D006801:Humans; D007118:Immunoassay / Q000379:methods*; D051379:Mice; D015203:Reproducibility of Results; D014157:Transcription Factors / Q000378:metabolism*
chemical_list: D004268:DNA-Binding Proteins; D006360:Heat-Shock Proteins; D014157:Transcription Factors; D004247:DNA