title: ENCODE whole-genome data in the UCSC Genome Browser.
abstract: The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC (http://encodeproject.org or http://genome.ucsc.edu/ENCODE) provides information about the ENCODE data and convenient links for access.
authors.affiliation: Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz, CA 95064, USA. kate@soe.ucsc.edu
authors.forename: Kate R
authors.initials: KR
authors.lastname: Rosenbloom
authors.forename: Timothy R
authors.initials: TR
authors.lastname: Dreszer
authors.forename: Michael
authors.initials: M
authors.lastname: Pheasant
authors.forename: Galt P
authors.initials: GP
authors.lastname: Barber
authors.forename: Laurence R
authors.initials: LR
authors.lastname: Meyer
authors.forename: Andy
authors.initials: A
authors.lastname: Pohl
authors.forename: Brian J
authors.initials: BJ
authors.lastname: Raney
authors.forename: Ting
authors.initials: T
authors.lastname: Wang
authors.forename: Angie S
authors.initials: AS
authors.lastname: Hinrichs
authors.forename: Ann S
authors.initials: AS
authors.lastname: Zweig
authors.forename: Pauline A
authors.initials: PA
authors.lastname: Fujita
authors.forename: Katrina
authors.initials: K
authors.lastname: Learned
authors.forename: Brooke
authors.initials: B
authors.lastname: Rhead
authors.forename: Kayla E
authors.initials: KE
authors.lastname: Smith
authors.forename: Robert M
authors.initials: RM
authors.lastname: Kuhn
authors.forename: Donna
authors.initials: D
authors.lastname: Karolchik
authors.forename: David
authors.initials: D
authors.lastname: Haussler
authors.forename: W James
authors.initials: WJ
authors.lastname: Kent
mesh_terms: D000818:Animals; D045744:Cell Line, Tumor; D019295:Computational Biology / Q000379:methods* / Q000639:trends; D030541:Databases, Genetic; D030561:Databases, Nucleic Acid; D015894:Genome, Human; D023281:Genomics; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D051379:Mice; D016415:Sequence Alignment; D012984:Software