title: Validation of self-made fluorescent cyanine dyes for 2D gel-based multi-fluorescence protein analysis.
abstract: Two-dimensional gel electrophoresis (2-DE) in combination with quantitative multi-fluorescence protein analysis (MFA) is the most versatile methodical tool for differential analysis of protein mixtures or even complex proteomes. It is based on covalent labelling of proteins with fluorescent cyanine dyes (Ethyl-Cy2, Propyl-Cy3 or Methyl-Cy5) before isoelectric focussing, enabling differential tagging of up to three samples which are finally separated on the same 2-D gel. To minimize costs and to increase the number of possible experiments, the cyanine dye NHS esters were synthesized in our own lab according to a protocol published by Jung and Kim (2006) . Self-made cyanine dyes were tested by studying their labelling and fluorescent properties and possible effects on the electrophoretic mobility of labelled proteins. To validate the potential use as labels in 2-DE/MFA experiments, dyes were used for the differential analysis of the proteome of thrombin-stimulated human vascular smooth muscle cells (VSMCs).
authors.affiliation: Institut für Pharmakologie und Klinische Pharmakologie, Universitätsklinikum Düsseldorf, Universitätsstrasse 1, Düsseldorf, Germany. kaber@uni-duesseldorf.de
authors.forename: Gernot
authors.initials: G
authors.lastname: Kaber
authors.forename: Ingo
authors.initials: I
authors.lastname: Vormbrock
authors.forename: Sonja
authors.initials: S
authors.lastname: Hartwig
authors.forename: Stefan
authors.initials: S
authors.lastname: Lehr
authors.forename: Karsten
authors.initials: K
authors.lastname: Schrör
mesh_terms: D000818:Animals; D002232:Carbocyanines / Q000032:analysis / Q000138:chemical synthesis*; D002478:Cells, Cultured; D015180:Electrophoresis, Gel, Two-Dimensional / Q000191:economics / Q000379:methods*; D005456:Fluorescent Dyes / Q000032:analysis / Q000138:chemical synthesis*; D006801:Humans; D008099:Liver / Q000737:chemistry; D051379:Mice; D032389:Myocytes, Smooth Muscle / Q000737:chemistry / Q000378:metabolism; D011506:Proteins / Q000737:chemistry*; D020543:Proteome / Q000737:chemistry*; D013917:Thrombin / Q000494:pharmacology; D014680:Veins / Q000166:cytology / Q000378:metabolism
chemical_list: D002232:Carbocyanines; D005456:Fluorescent Dyes; D011506:Proteins; D020543:Proteome; D013917:Thrombin