Residue-specific information about the dynamics of antimicrobial peptides from (1)H-(15)N and (2)H solid-state NMR spectroscopy.
We present a new method to obtain information about the conformational dynamics of membrane-proteins using solid-state NMR experiments of oriented samples. By measuring the orientation-dependent (1)H-(15)N dipole-dipole coupling, (15)N anisotropic chemical shift, and (2)H quadrupole coupling parameters for a single residue, it is possible to obtain information about the local dynamics of each residue in the protein. This may be interpreted on an individual basis or through models extended to study conformational motion of membrane-protein segments. The method is demonstrated for the antimicrobial peptaibol alamethicin for which combined analysis of anisotropic interactions for the Aib(8) residue provides detailed information about helix-tilt angle, wobbling, and oscillatory rotation around the helix axis in the membrane bound state. This information is in very good agreement with coarse-grained MD simulations of the peptide in lipid bilayers.
Bertelsen
Kresten
K
Center for Insoluble Protein Structures (inSPIN), Interdisciplinary Nanoscience Center (iNANO), and Department of Chemistry, Bioinformatics Research Center, University of Aarhus, DK-8000 Aarhus C, Denmark.
Paaske
Berit
B
Thøgersen
Lea
L
Tajkhorshid
Emad
E
Schiøtt
Birgit
B
Skrydstrup
Troels
T
Nielsen
Niels Chr
NC
Vosegaard
Thomas
T
D000408:Alamethicin / Q000737:chemistry; D023181:Antimicrobial Cationic Peptides / Q000737:chemistry*; D003198:Computer Simulation; D003903:Deuterium; D008051:Lipid Bilayers; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D056004:Molecular Dynamics Simulation; D009587:Nitrogen Isotopes
D023181:Antimicrobial Cationic Peptides; D008051:Lipid Bilayers; D009587:Nitrogen Isotopes; D000408:Alamethicin; D003903:Deuterium