title: DNA methylation within the normal colorectal mucosa is associated with pathway-specific predisposition to cancer.
abstract: There are two major molecular pathways to sporadic colorectal cancer, the chromosomal instability (CIN) and the CpG island methylator phenotype (CIMP) pathways. This study recruited 166 patients undergoing colonoscopy. Biopsy samples were collected from the cecum, transverse colon, sigmoid colon and rectum. DNA methylation was quantified at 'type A' (ESR1, GATA5, HIC1, HPP1, SFRP1) and 'type C' markers (MGMT, MLH1, CDKN2A, MINT2, MINT31, IGF2, CACNA1G, NEUROG1, SOCS1, RUNX3), and LINE-1. 'Type A' genes are frequently methylated in normal and neoplastic tissues, proportional to tissue age. 'Type C' methylation is more specific for neoplasia. The last five 'type C' markers comprise a CIMP panel. The mean 'type A' and CIMP-panel methylation Z-scores were calculated. In all, 88 patients had adenomatous lesions, 32 had proximal serrated polyps (PSPs) and 50 were normal. Most 'type A' genes showed direct correlations between methylation and age (ESR1, rho=0.66, P<0.0001), with higher methylation distally (ESR1, P<0.0001). On multivariate analysis, 'type A' methylation was inversely associated with colorectal adenomas (odds ratio=0.23, P<0.001), the precursor to CIN cancers. CIMP-panel methylation was significantly associated with advanced PSPs (odds ratio=5.1, P=0.009), the precursor to CIMP cancers. DNA methylation in normal mucosa varied with age and region and was associated with pathway-specific pathology. In the future, the colorectal field could yield important information and potentially inform clinical practice.
authors: Royal Brisbane and Women's Hospital Research Foundation Clinical Research Centre, Brisbane, Queensland, Australia. daniel.worthley@uqconnect.edu.au
authors: D L
authors: DL
authors: Worthley
authors: V L J
authors: VL
authors: Whitehall
authors: R L
authors: RL
authors: Buttenshaw
authors: N
authors: N
authors: Irahara
authors: S A
authors: SA
authors: Greco
authors: I
authors: I
authors: Ramsnes
authors: K-A
authors: KA
authors: Mallitt
authors: R K
authors: RK
authors: Le Leu
authors: J
authors: J
authors: Winter
authors: Y
authors: Y
authors: Hu
authors: S
authors: S
authors: Ogino
authors: G P
authors: GP
authors: Young
authors: B A
authors: BA
authors: Leggett
mesh_terms: D000328:Adult; D000367:Age Factors; D000368:Aged; D000369:Aged, 80 and over; D003106:Colon / Q000378:metabolism; D003113:Colonoscopy; D015179:Colorectal Neoplasms / Q000235:genetics* / Q000473:pathology; D018899:CpG Islands / Q000235:genetics; D019175:DNA Methylation; D005260:Female; D020022:Genetic Predisposition to Disease / Q000145:classification / Q000235:genetics*; D006801:Humans; D007413:Intestinal Mucosa / Q000378:metabolism*; D008297:Male; D008875:Middle Aged; D015999:Multivariate Analysis; D012007:Rectum / Q000378:metabolism; D012737:Sex Factors; D015398:Signal Transduction / Q000235:genetics; D012907:Smoking; D055815:Young Adult