NCBI Peptidome: a new repository for mass spectrometry proteomics data.
Peptidome is a public repository that archives and freely distributes tandem mass spectrometry peptide and protein identification data generated by the scientific community. Data from all stages of a mass spectrometry experiment are captured, including original mass spectra files, experimental metadata and conclusion-level results. The submission process is facilitated through acceptance of data in commonly used open formats, and all submissions undergo syntactic validation and curation in an effort to uphold data integrity and quality. Peptidome is not restricted to specific organisms, instruments or experiment types; data from any tandem mass spectrometry experiment from any species are accepted. In addition to data storage, web-based interfaces are available to help users query, browse and explore individual peptides, proteins or entire Samples and Studies. Results are integrated and linked with other NCBI resources to ensure dissemination of the information beyond the mass spectroscopy proteomics community. Peptidome is freely accessible at http://www.ncbi.nlm.nih.gov/peptidome.
Ji
Li
L
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894-6511, USA.
Barrett
Tanya
T
Ayanbule
Oluwabukunmi
O
Troup
Dennis B
DB
Rudnev
Dmitry
D
Muertter
Rolf N
RN
Tomashevsky
Maxim
M
Soboleva
Alexandra
A
Slotta
Douglas J
DJ
D019295:Computational Biology / Q000379:methods* / Q000639:trends; D030541:Databases, Genetic; D030561:Databases, Nucleic Acid; D030562:Databases, Protein; D020869:Gene Expression Profiling; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D013058:Mass Spectrometry / Q000379:methods*; D009317:National Library of Medicine (U.S.); D010455:Peptides / Q000737:chemistry; D017434:Protein Structure, Tertiary; D040901:Proteomics / Q000379:methods*; D012984:Software; D014481:United States
D010455:Peptides