Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies.
The restricted neutralization breadth of vaccine-elicited antibodies is a major limitation of current human immunodeficiency virus-1 (HIV-1) candidate vaccines. In order to permit the efficient identification of vaccines with enhanced capacity for eliciting cross-reactive neutralizing antibodies (NAbs) and to assess the overall breadth and potency of vaccine-elicited NAb reactivity, we assembled a panel of 109 molecularly cloned HIV-1 Env pseudoviruses representing a broad range of genetic and geographic diversity. Viral isolates from all major circulating genetic subtypes were included, as were viruses derived shortly after transmission and during the early and chronic stages of infection. We assembled a panel of genetically diverse HIV-1-positive (HIV-1(+)) plasma pools to assess the neutralization sensitivities of the entire virus panel. When the viruses were rank ordered according to the average sensitivity to neutralization by the HIV-1(+) plasmas, a continuum of average sensitivity was observed. Clustering analysis of the patterns of sensitivity defined four subgroups of viruses: those having very high (tier 1A), above-average (tier 1B), moderate (tier 2), or low (tier 3) sensitivity to antibody-mediated neutralization. We also investigated potential associations between characteristics of the viral isolates (clade, stage of infection, and source of virus) and sensitivity to NAb. In particular, higher levels of NAb activity were observed when the virus and plasma pool were matched in clade. These data provide the first systematic assessment of the overall neutralization sensitivities of a genetically and geographically diverse panel of circulating HIV-1 strains. These reference viruses can facilitate the systematic characterization of NAb responses elicited by candidate vaccine immunogens.
Seaman
Michael S
MS
Division of Viral Pathogenesis, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02215, USA. mseaman@bidmc.harvard.edu
Janes
Holly
H
Hawkins
Natalie
N
Grandpre
Lauren E
LE
Devoy
Colleen
C
Giri
Ayush
A
Coffey
Rory T
RT
Harris
Linda
L
Wood
Blake
B
Daniels
Marcus G
MG
Bhattacharya
Tanmoy
T
Lapedes
Alan
A
Polonis
Victoria R
VR
McCutchan
Francine E
FE
Gilbert
Peter B
PB
Self
Steve G
SG
Korber
Bette T
BT
Montefiori
David C
DC
Mascola
John R
JR
D057134:Antibodies, Neutralizing / Q000276:immunology*; D002460:Cell Line; D015686:Gene Products, env / Q000276:immunology*; D015658:HIV Infections / Q000097:blood / Q000821:virology; D015497:HIV-1 / Q000145:classification / Q000235:genetics / Q000276:immunology*; D006801:Humans
D057134:Antibodies, Neutralizing; D015686:Gene Products, env