title: Discovery and characterization of cadherin domains in Saccharophagus degradans 2-40.
abstract: Saccharophagus degradans strain 2-40 is a prominent member of newly discovered group of marine and estuarine bacteria that recycle complex polysaccharides. The S. degradans 2-40 genome codes for 15 extraordinary long polypeptides, ranging from 274 to 1,600 kDa. Five of these contain at least 52 cadherin (CA) and cadherin-like (CADG) domains, the types of which were reported to bind calcium ions and mediate protein/protein interactions in metazoan systems. In order to evaluate adhesive features of these domains, recombinant CA doublet domains (two neighboring domains) from CabC (Sde_3323) and recombinant CADG doublet domains from CabD (Sde_0798) were examined qualitatively and quantitatively for homophilic and heterophilic interactions. In addition, CA and CADG doublet domains were tested for adhesion to the surface of S. degradans 2-40. Results showed obvious homophilic and heterophilic, calcium ion-dependent interactions between CA and CADG doublet domains. Likewise, CA and CADG doublet domains adhered to the S. degradans 2-40 surface of cells that were grown on xylan from birch wood or pectin, respectively, as a sole carbon source. This research shows for the first time that bacterial cadherin homophilic and heterophilic interactions may be similar in their nature to cadherin domains from metazoan lineages. We hypothesize that S. degradans 2-40 cadherin and cadherin-like multiple domains contribute to protein-protein interactions that may mediate cell-cell contact in the marine environment.
authors.affiliation: Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
authors.forename: Milana
authors.initials: M
authors.lastname: Fraiberg
authors.forename: Ilya
authors.initials: I
authors.lastname: Borovok
authors.forename: Ronald M
authors.initials: RM
authors.lastname: Weiner
authors.forename: Raphael
authors.initials: R
authors.lastname: Lamed
mesh_terms: D034241:Alteromonadaceae / Q000235:genetics* / Q000254:growth & development; D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism*; D029662:Betula / Q000737:chemistry; D015820:Cadherins / Q000235:genetics* / Q000378:metabolism*; D002118:Calcium / Q000378:metabolism; D010368:Pectins / Q000302:isolation & purification / Q000378:metabolism; D011485:Protein Binding; D025941:Protein Interaction Mapping; D017434:Protein Structure, Tertiary; D014990:Xylans / Q000302:isolation & purification / Q000378:metabolism
chemical_list: D001426:Bacterial Proteins; D015820:Cadherins; D014990:Xylans; D010368:Pectins; D002118:Calcium