title: Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages.
abstract: To determine the relative importance of temperate bacteriophage in the horizontal gene transfer of fitness and virulence determinants of Enterococcus faecalis, a panel of 47 bacteremia isolates were treated with the inducing agents mitomycin C, norfloxacin, and UV radiation. Thirty-four phages were purified from culture supernatants and discriminated using pulsed-field gel electrophoresis (PFGE) and restriction mapping. From these analyses the genomes of eight representative phages were pyrosequenced, revealing four distinct groups of phages. Three groups of phages, PhiFL1 to 3, were found to be sequence related, with PhiFL1A to C and PhiFL2A and B sharing the greatest identity (87 to 88%), while PhiFL3A and B share 37 to 41% identity with PhiFL1 and 2. PhiFL4A shares 3 to 12% identity with the phages PhiFL1 to 3. The PhiFL3A and B phages possess a high DNA sequence identity with the morphogenesis and lysis modules of Lactococcus lactis subsp. cremoris prophages. Homologs of the Streptococcus mitis platelet binding phage tail proteins, PblA and PblB, are encoded on each sequenced E. faecalis phage. Few other phage genes encoding potential virulence functions were identified, and there was little evidence of carriage of lysogenic conversion genes distal to endolysin, as has been observed with genomes of many temperate phages from the opportunist pathogens Staphylococcus aureus and Streptococcus pyogenes. E. faecalis JH2-2 lysogens were generated using the eight phages, and these were examined for their relative fitness in Galleria mellonella. Several lysogens exhibited different effects upon survival of G. mellonella compared to their isogenic parent. The eight phages were tested for their ability to package host DNA, and three were shown to be very effective for generalized transduction of naive host cells of the laboratory strains OG1RF and JH2-2.
authors.affiliation: School of Biological Sciences, University of Liverpool, Liverpool, United Kingdom.
authors.forename: Azra
authors.initials: A
authors.lastname: Yasmin
authors.forename: John G
authors.initials: JG
authors.lastname: Kenny
authors.forename: Jayendra
authors.initials: J
authors.lastname: Shankar
authors.forename: Alistair C
authors.initials: AC
authors.lastname: Darby
authors.forename: Neil
authors.initials: N
authors.lastname: Hall
authors.forename: Clive
authors.initials: C
authors.lastname: Edwards
authors.forename: Malcolm J
authors.initials: MJ
authors.lastname: Horsburgh
mesh_terms: D000900:Anti-Bacterial Agents / Q000494:pharmacology; D016470:Bacteremia / Q000382:microbiology; D001435:Bacteriophages / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D016172:DNA Fingerprinting; D004279:DNA, Viral / Q000235:genetics; D016521:Electrophoresis, Gel, Pulsed-Field; D013293:Enterococcus faecalis / Q000187:drug effects / Q000302:isolation & purification / Q000528:radiation effects / Q000821:virology*; D023061:Gene Order; D016679:Genome, Viral; D016908:Gram-Positive Bacterial Infections / Q000382:microbiology; D006801:Humans; D046529:Microscopy, Electron, Transmission; D016685:Mitomycin / Q000494:pharmacology; D008969:Molecular Sequence Data; D009643:Norfloxacin / Q000494:pharmacology; D039002:Prophages / Q000235:genetics*; D017422:Sequence Analysis, DNA; D017385:Sequence Homology; D026801:Synteny; D014161:Transduction, Genetic; D014466:Ultraviolet Rays; D014771:Virion / Q000648:ultrastructure; D014775:Virus Activation / Q000187:drug effects / Q000528:radiation effects
chemical_list: D000900:Anti-Bacterial Agents; D004279:DNA, Viral; D016685:Mitomycin; D009643:Norfloxacin