Negative dissociation energy phenomenon of metastable H-bonds as revealed in triplex DNA hole migration.
Ab initio calculations reveal an unknown energetic phenomenon for H-bonds in the hole-trapping triplex C(p)*GC motif observed experimentally in hole migration which can explain the lower but really available oxidization possibility in C(p)*GC site. Hole trapping can considerably destabilize the C(p)*GC unit and lead to an unexpected barrier-hindered channel with a negative dissociation energy. This channel is governed by a balance between electrostatic repulsion and H-bonding attraction in the two associated moieties and different attenuations of two opposite interactions with respect to the H-bond distance. This C(p)*GC unit can be viewed as a high-energy node in a DNA wire which modulates migration of a hole into or through it via its unusual energetics. It provides useful information for understanding of an unknown type of the complicated intermolecular interactions, a novel type of "high-energy" bond, and can be applied further to interpret the hidden transport properties and the energy conversion/transfer mechanisms in the related fields.
Wang
Jun
J
The Center for Modeling and Simulation Chemistry, Institute of Theoretical Chemistry, Shandong University, Jinan, 250100, P.R. China.
Sun
Lixiang
L
Bu
Yuxiang
Y
D004247:DNA / Q000737:chemistry*; D006860:Hydrogen Bonding; D009690:Nucleic Acid Conformation; D055672:Static Electricity; D013816:Thermodynamics
C051802:triplex DNA; D004247:DNA