sORF finder: a program package to identify small open reading frames with high coding potential.
CONCLUSIONS
sORF finder is a program package for identifying small open reading frames (sORFs) with high-coding potential. This application allows the identification of coding sORFs according to the nucleotide composition bias among coding sequences and the potential functional constraint at the amino acid level through evaluation of synonymous and non-synonymous substitution rates.


BACKGROUND
Online tools and source codes are freely available at http://evolver.psc.riken.jp/.


BACKGROUND
Supplementary data are available at Bioinformatics online.
Hanada
Kousuke
K
Plant Science Center, RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. kohanada@psc.riken.jp
Akiyama
Kenji
K
Sakurai
Tetsuya
T
Toyoda
Tetsuro
T
Shinozaki
Kazuo
K
Shiu
Shin-Han
SH
D000595:Amino Acid Sequence; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D016366:Open Reading Frames; D012984:Software