title: Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls.
abstract: Industrial processes to produce ethanol from lignocellulosic materials are available, but improved efficiency is necessary to make them economically viable. One of the limitations for lignocellulosic conversion to ethanol is the inaccessibility of the cellulose and hemicelluloses within the tight cell wall matrix. Ferulates (FA) can cross-link different arabinoxylan molecules in the cell wall of grasses via diferulate and oligoferulate bridges. This complex cross-linking is thought to be a key factor in limiting the biodegradability of grass cell walls and, therefore, the reduction in FA is an attractive target to improve enzyme accessibility to cellulose and hemicelluloses. Unfortunately, our knowledge of the genes responsible for the incorporation of FA to the cell wall is limited. A bioinformatics prediction based on the gene similarities and higher transcript abundance in grasses relative to dicot species suggested that genes from the pfam family PF02458 may act as arabinoxylan feruloyl transferases. We show here that the FA content in the cell walls and the transcript levels of rice genes Os05g08640, Os06g39470, Os01g09010 and Os06g39390, are both higher in the stems than in the leaves. In addition, an RNA interference (RNAi) construct that simultaneously down-regulates transcript levels of these four genes is associated with a significant reduction in FA of the cell walls from the leaves of the transgenic plants relative to the control (19% reduction, P < 0.0001). Therefore, our experimental results in rice support the bioinformatics prediction that members of family PF02458 are involved in the incorporation of FA into the cell wall in grasses.
authors.affiliation: Department of Plant Sciences, University of California, One Shields Avenue, Mail Stop 1, Davis, CA 95616, USA.
authors.forename: Fernando
authors.initials: F
authors.lastname: Piston
authors.forename: Cristobal
authors.initials: C
authors.lastname: Uauy
authors.forename: Lianhai
authors.initials: L
authors.lastname: Fu
authors.forename: James
authors.initials: J
authors.lastname: Langston
authors.forename: John
authors.initials: J
authors.lastname: Labavitch
authors.forename: Jorge
authors.initials: J
authors.lastname: Dubcovsky
mesh_terms: D002473:Cell Wall / Q000378:metabolism*; D003373:Coumaric Acids / Q000378:metabolism*; D015536:Down-Regulation; D020224:Expressed Sequence Tags; D012275:Oryza / Q000201:enzymology / Q000235:genetics* / Q000378:metabolism; D010802:Phylogeny; D018515:Plant Leaves / Q000378:metabolism; D010940:Plant Proteins / Q000235:genetics*; D030821:Plants, Genetically Modified / Q000378:metabolism; D034622:RNA Interference; D012333:RNA, Messenger / Q000378:metabolism; D014166:Transferases / Q000235:genetics*
chemical_list: D003373:Coumaric Acids; D010940:Plant Proteins; D012333:RNA, Messenger; C004999:ferulic acid; D014166:Transferases