Sorting protein lists with nwCompare: a simple and fast algorithm for n-way comparison of proteomic data files.
MS, the reference technology for proteomics, routinely produces large numbers of protein lists whose fast comparison would prove very useful. Unfortunately, most softwares only allow comparisons of two to three lists at once. We introduce here nwCompare, a simple tool for n-way comparison of several protein lists without any query language, and exemplify its use with differential and shared cancer cell proteomes. As the software compares character strings, it can be applied to any type of data mining, such as genomic or metabolomic datalists.
Pont
Frédéric
F
INSERM, Plateau technique Interactions et Profils d'expression Protéiques, Institut Fédératif de Recherche Bio-Médicale de Toulouse, Toulouse, France. frederic.pont@inserm.fr
Fournié
Jean Jacques
JJ
D000465:Algorithms; D045744:Cell Line, Tumor; D001330:Electronic Data Processing / Q000379:methods*; D006801:Humans; D009363:Neoplasm Proteins / Q000032:analysis* / Q000145:classification*; D040901:Proteomics / Q000379:methods*
D009363:Neoplasm Proteins