title: Diagnostic microarray for human and animal bacterial diseases and their virulence and antimicrobial resistance genes.
abstract: Rapid diagnosis and treatment of disease is often based on the identification and characterization of causative agents derived from phenotypic characteristics. Current methods can be laborious and time-consuming, often requiring many skilled personnel and a large amount of lab space. The objective of our study was to develop a spotted microarray for rapid identification and characterization of bacterial pathogens and their antimicrobial resistance genes. Our spotted microarray consists of 489 70mer probes that detect 40 bacterial pathogens of medical, veterinary and zoonotic importance (including 15 NIAID Category A, B and C pathogens); associated genes that encode resistance for antimicrobial and metal resistance; and DNA elements that are important for horizontal gene transfer among bacteria. High specificity and reliability of the microarray was achieved for bacterial pathogens of animal and human importance by validating MDR pathogenic bacteria as pure cultures or by following their inoculation in complex and highly organic sample matrices, such as soil and manure.
authors.affiliation: Department of Diagnostic Medicine/Pathobiology, Kansas State University, College of Veterinary Medicine, Manhattan, KS 66502, USA.
authors.forename: Greg
authors.initials: G
authors.lastname: Peterson
authors.forename: Jianfa
authors.initials: J
authors.lastname: Bai
authors.forename: T G
authors.initials: TG
authors.lastname: Nagaraja
authors.forename: Sanjeev
authors.initials: S
authors.lastname: Narayanan
mesh_terms: D000818:Animals; D002417:Cattle; D004269:DNA, Bacterial / Q000235:genetics / Q000302:isolation & purification; D024881:Drug Resistance, Bacterial / Q000235:genetics; D013293:Enterococcus faecalis / Q000235:genetics* / Q000302:isolation & purification* / Q000472:pathogenicity; D016984:Enterococcus faecium / Q000235:genetics* / Q000302:isolation & purification* / Q000472:pathogenicity; D004926:Escherichia coli / Q000235:genetics / Q000302:isolation & purification / Q000472:pathogenicity; D005243:Feces / Q000382:microbiology; D005675:Fusobacterium necrophorum / Q000235:genetics / Q000302:isolation & purification / Q000472:pathogenicity; D005798:Genes, Bacterial; D019450:Genes, MDR; D006090:Gram-Negative Bacteria / Q000235:genetics* / Q000302:isolation & purification* / Q000472:pathogenicity; D016905:Gram-Negative Bacterial Infections / Q000175:diagnosis* / Q000382:microbiology; D016908:Gram-Positive Bacterial Infections / Q000175:diagnosis* / Q000382:microbiology; D006801:Humans; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012486:Salmonella typhimurium / Q000235:genetics / Q000302:isolation & purification / Q000472:pathogenicity; D012680:Sensitivity and Specificity; D012988:Soil Microbiology; D013045:Species Specificity; D014774:Virulence; D037521:Virulence Factors / Q000235:genetics*
chemical_list: D004269:DNA, Bacterial; D037521:Virulence Factors