title: Potential of mean force of association of large hydrophobic particles: toward the nanoscale limit.
abstract: The potentials of mean force (PMFs) were determined, in both water with the TIP3P water model and in vacuo, for systems involving formation of nonpolar dimers composed of bicyclooctane, adamantane (both an all-atom model and a sphere with the radius of 3.4 A representing adamantane), and fullerene, respectively. A series of umbrella-sampling molecular dynamics simulations with the AMBER force field were carried out for each pair under both environmental conditions. The PMFs were calculated by using the weighted histogram analysis method. The results were compared with our previously determined PMF for neopentane. The shape of the PMFs for dimers of all four nonpolar molecules is characteristic of hydrophobic interactions with contact and solvent-separated minima and desolvation maxima. The positions of all these minima and maxima change with the size of the nonpolar molecule; for larger molecules they shift toward larger distances. Comparison of the PMFs of the bicyclooctane, adamantane, and fullerene dimers in water and in vacuo shows that hydrophobic interactions in each dimer are different from that for the dimer of neopentane. Interactions in the bicyclooctane, adamantane, and fullerene dimers are stronger in vacuo than in water. These dimers cannot be treated as classical, spherical, hydrophobic objects. The solvent contribution to the PMF was also computed by subtracting the PMF determined in vacuo from that in explicit solvent. The solvent contribution to the PMFs of bicyclooctane, adamantane, and fullerene is positive, as opposed to that of neopentane. The water molecules in the first solvation sphere of both adamantane and neopentane dimers are more ordered as compared to bulk water, with their dipole moments pointing away from the surface of the dimers. The average number of hydrogen bonds per water molecule in the first hydration shell of adamantane is smaller compared to that in bulk water, but this shell is thicker for all-atom adamantane than for neopentane or a spherical model of adamantane. In the second hydration shell, the average number of hydrogen bonds is greater compared to that in bulk water only for neopentane and a spherical model of adamantane but not for the all-atom model. The strength of the hydrophobic interactions shows a linear dependence on the number of carbon atoms both in water and in vacuo. Smaller nonpolar particles interact more strongly in water than in vacuo. For larger molecules, such as bicyclooctane, adamantane and fullerene, the reversed tendency is observed.
authors.affiliation: Faculty of Chemistry, University of Gdańsk, ul. Sobieskiego 18, 80-952 Gdańsk, Poland. momo@chem.univ.gda.pl
authors.forename: Mariusz
authors.initials: M
authors.lastname: Makowski
authors.forename: Cezary
authors.initials: C
authors.lastname: Czaplewski
authors.forename: Adam
authors.initials: A
authors.lastname: Liwo
authors.forename: Harold A
authors.initials: HA
authors.lastname: Scheraga
mesh_terms: D000218:Adamantane / Q000737:chemistry*; D001643:Bridged Bicyclo Compounds / Q000737:chemistry*; D019281:Dimerization; D037741:Fullerenes / Q000737:chemistry*; D057927:Hydrophobic and Hydrophilic Interactions; D008958:Models, Molecular; D009795:Octanes / Q000737:chemistry*; D010420:Pentanes / Q000737:chemistry; D014867:Water / Q000737:chemistry
chemical_list: D001643:Bridged Bicyclo Compounds; D037741:Fullerenes; D009795:Octanes; D010420:Pentanes; D014867:Water; C039752:neopentane; D000218:Adamantane; C026728:octane