Generation of spatiotemporally correlated spike trains and local field potentials using a multivariate autoregressive process.
Experimental advances allowing for the simultaneous recording of activity at multiple sites have significantly increased our understanding of the spatiotemporal patterns in neural activity. The impact of such patterns on neural coding is a fundamental question in neuroscience. The simulation of spike trains with predetermined activity patterns is therefore an important ingredient in the study of potential neural codes. Such artificially generated spike trains could also be used to manipulate cortical neurons in vitro and in vivo. Here, we propose a method to generate spike trains with given mean firing rates and cross-correlations. To capture this statistical structure we generate a point process by thresholding a stochastic process that is continuous in space and discrete in time. This stochastic process is obtained by filtering Gaussian noise through a multivariate autoregressive (AR) model. The parameters of the AR model are obtained by a nonlinear transformation of the point-process correlations to the continuous-process correlations. The proposed method is very efficient and allows for the simulation of large neural populations. It can be optimized to the structure of spatiotemporal correlations and generalized to nonstationary processes and spatiotemporal patterns of local field potentials and spike trains.
Gutnisky
Diego A
DA
Department of Neurobiology and Anatomy, University of Texas-Houston Medical School, Houston, Texas, USA. gutniskyd@janelia.hhmi.org
Josić
Kresimir
K
D000200:Action Potentials; D000465:Algorithms; D000818:Animals; D003198:Computer Simulation; D008959:Models, Neurological; D015999:Multivariate Analysis; D009474:Neurons / Q000502:physiology*; D017711:Nonlinear Dynamics; D016011:Normal Distribution; D011336:Probability; D012044:Regression Analysis; D012815:Signal Processing, Computer-Assisted; D013269:Stochastic Processes; D013997:Time Factors