Ion specificity at the peptide bond: molecular dynamics simulations of N-methylacetamide in aqueous salt solutions.
Affinities of alkali cations and halide anions for the peptide group were quantified using molecular dynamics simulations of aqueous solutions of N-methylacetamide using both nonpolarizable and polarizable force fields. Potassium and, more strongly, sodium exhibit an affinity for the carbonyl oxygen of the amide group, while none of the halide anions shows any appreciable attraction for the amide hydrogen. Heavier halides, however, interact with the hydrophobic methyl groups of N-methylacetamide. Using the present results for a model of the peptide bond we predict that the destabilizing effect of weakly hydrated Hofmeister ions, such as bromide or iodide, is not due to direct interactions with the backbone but rather due to attraction to hydrophobic regions of the protein.
Heyda
Jan
J
Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo nàm. 2, 16610 Prague 6, Czech Republic.
Vincent
Jordan C
JC
Tobias
Douglas J
DJ
Dzubiella
Joachim
J
Jungwirth
Pavel
P
D000081:Acetamides / Q000737:chemistry*; D007477:Ions / Q000737:chemistry*; D056004:Molecular Dynamics Simulation; D010455:Peptides / Q000737:chemistry*; D012492:Salts / Q000737:chemistry; D012996:Solutions / Q000737:chemistry; D014867:Water / Q000737:chemistry
D000081:Acetamides; D007477:Ions; D010455:Peptides; D012492:Salts; D012996:Solutions; D014867:Water; C018595:N-methylacetamide