title: Biodiversity analysis by polyphasic study of marine bacteria associated with biocorrosion phenomena.
abstract: OBJECTIVE
  A polyphasic approach was used to study the biodiversity bacteria associated with biocorrosion processes, in particular sulfate-reducing bacteria (SRB) and thiosulfate-reducing bacteria (TRB) which are described to be particularly aggressive towards metallic materials, notably via hydrogen sulfide release.
  
  
  RESULTS
  To study this particular flora, an infrared spectra library of 22 SRB and TRB collection strains were created using a Common Minimum Medium (CMM) developed during this study and standardized culture conditions. The CMM proved its ability to allow for growth of both SRB and TRB strains. These sulfurogen collection strains were clearly discriminated and differentiated at the genus level by fourier transform infrared (FT-IR) spectroscopy. In a second step, infrared spectra of isolates, recovered from biofilms formed on carbon steel coupons immersed for 1 year in three different French harbour areas, were compared to the infrared reference spectra library. In parallel, molecular methods (M13-PCR and 16S rRNA gene sequencing) were used to qualitatively evaluate the intra- and inter-species genetic diversity of biofilm isolates. The biodiversity study indicated that strains belonging to the Vibrio genus were the dominant population; strains belonging to the Desulfovibrio genus (SRB) and Peptostreptococcaceae were also identified.
  
  
  CONCLUSIONS
  Overall, the combination of the FT-IR spectroscopy and molecular approaches allowed for the taxonomic and ecological study of a bacterial flora, cultivated on CMM, associated with microbiology-induced corrosion (MIC) processes.
  
  
  CONCLUSIONS
  Via the use of the CMM medium, the culture of marine bacteria (including both SRB and TRB bacteria) was allowed, and the implication of nonsulforogen bacteria in MIC was observed. Their involvement in the biocorrosion phenomena will have to be studied and taken into account in the future.
authors.affiliation: Equipe de Recherche en Physico-Chimie et Biotechnologies, Université Caen Basse Normandie, Caen Cedex, France.
authors.forename: N
authors.initials: N
authors.lastname: Boudaud
authors.forename: M
authors.initials: M
authors.lastname: Coton
authors.forename: E
authors.initials: E
authors.lastname: Coton
authors.forename: S
authors.initials: S
authors.lastname: Pineau
authors.forename: J
authors.initials: J
authors.lastname: Travert
authors.forename: C
authors.initials: C
authors.lastname: Amiel
mesh_terms: D044822:Biodiversity; D018441:Biofilms; D003343:Corrosion; D003470:Culture Media; D004269:DNA, Bacterial / Q000235:genetics; D005798:Genes, Bacterial; D020459:Genes, rRNA; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D017550:Spectroscopy, Fourier Transform Infrared; D013232:Steel; D013431:Sulfates / Q000378:metabolism; D016999:Sulfur-Reducing Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D014871:Water Microbiology
chemical_list: D003470:Culture Media; D004269:DNA, Bacterial; D013431:Sulfates; D013232:Steel