title: CagA status and VacA subtypes of Helicobacter pylori in relation to histopathologic findings in Iranian population.
abstract: OBJECTIVE
  The aim of this study was to detect dominant cagA/vacA genotypes of Helicobacter Pylori (H. pylori) and determine correlations between different cagA/vacA genotypes and histologic features of chronic gastritis in Iranian patients.
  
  
  METHODS
  Gastric biopsy was taken from 166 patients with nonulcer dyspepsia. The specimens were processed and DNA from each H. pylori isolate was extracted from multiple colony sweeps for identification of glmM gene. The vacA subtypes and cagA gene were tested by PCR . Histopathological features were recorded and graded according to partial Sydney system.
  
  
  RESULTS
  Of the 86 strains, 66 (76.7%) were cagA positive. The proportions of vacA gene subtypes s1, s2, m1 and m2 in the 78 strains isolated were 70.5%, 29.5%, 37.2% and 62.8%, respectively. About 83.3% of the vacA-positive strains had s1 allele. Twenty-six strains (33.3%) were positive for both cagA and m1 allele. Positive cagA status and vacA subtypes were not associated significantly with presence of neutrophil infiltration, intestinal metaplasia or H. pylori density. Only vacA s1 was significantly associated with more severe inflammation (P=0.02). The dominant genotype of H. pylori was vacA plus s1/m2. CagA gene positivity rate was not closely associated with severity of the disease.
  
  
  CONCLUSIONS
  H. pylori strains showing vacA s1 genotype were associated with more severe gastritis. These findings show that vacA genotyping may have clinical relevance in Iran.
authors.affiliation: Department of Pathology, Research Center for Gastroenterology and Liver Disease, Shaheed Beheshti University, MC, Tehran, Iran.
authors.forename: Mahsa
authors.initials: M
authors.lastname: Molaei
authors.forename: Forough
authors.initials: F
authors.lastname: Foroughi
authors.forename: Reza
authors.initials: R
authors.lastname: Mashayekhi
authors.forename: Mehrdad
authors.initials: M
authors.lastname: Haghazali
authors.forename: Homayoon
authors.initials: H
authors.lastname: Zojaji
authors.forename: Fereshteh
authors.initials: F
authors.lastname: Jafari
authors.forename: Hossein
authors.initials: H
authors.lastname: Dabiri
authors.forename: Mohammad Reza
authors.initials: MR
authors.lastname: Zali
mesh_terms: D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D000942:Antigens, Bacterial / Q000235:genetics*; D001426:Bacterial Proteins / Q000145:classification* / Q000235:genetics*; D001706:Biopsy; D003430:Cross-Sectional Studies; D004269:DNA, Bacterial / Q000235:genetics; D005260:Female; D005756:Gastritis / Q000473:pathology; D005838:Genotype; D016481:Helicobacter Infections / Q000382:microbiology* / Q000473:pathology*; D016480:Helicobacter pylori / Q000235:genetics* / Q000302:isolation & purification; D006651:Histocytochemistry; D006801:Humans; D007492:Iran; D008297:Male; D008875:Middle Aged; D016133:Polymerase Chain Reaction; D012720:Severity of Illness Index; D013223:Statistics as Topic; D055815:Young Adult
chemical_list: D000942:Antigens, Bacterial; D001426:Bacterial Proteins; D004269:DNA, Bacterial; C074689:VacA protein, Helicobacter pylori; C080866:cagA protein, Helicobacter pylori