title: Differential expression of tissue repair genes in the pathogenesis of chronic obstructive pulmonary disease.
abstract: BACKGROUND
  The airflow limitation that defines severity of chronic obstructive pulmonary disease (COPD) is caused by a combination of small airway obstruction and emphysematous lung destruction.
  
  
  OBJECTIVE
  To examine the hypothesis that small airway obstructive and emphysematous destructive lesions are produced by differential expression of genes associated with tissue repair.
  
  
  METHODS
  The expression of 54 genes associated with repair of repetitively damaged tissue was measured in 136 paired samples of small bronchioles and surrounding lung tissue separated by laser capture microdissection. These samples were collected from 63 patients at different levels of disease severity who required surgery for either lung cancer or lung transplantation for very severe COPD. Gene expression was measured by quantitative polymerase chain reaction in these paired samples and compared with the FEV(1) by linear regression analysis.
  
  
  RESULTS
  After corrections for false discovery rates, only 2 of 10 genes (serpin peptidase inhibitor/plasminogen activator inhibitor member 2 and matrix metalloproteinase [MMP] 10) increased, whereas 8 (MMP2, integrin-alpha1, vascular endothelial growth factor, a disintegrin and metallopeptidase domain 33, scatter factor/hepatocyte growth factor, tissue inhibitor of matrix metalloproteinase-2, fibronectin, and collagen 3alpha1) decreased in small airways in association with FEV(1). In contrast, 8/12 genes (early growth response factor 1, MMP1, MMP9, MMP10, plasminogen activator urokinase, plasminogen activator urokinase receptor, tumor necrosis factor, and IL13) increased and 4/12 (MMP2, tissue inhibitor of matrix metalloproteinase-1, collagen 1alpha1, and transforming growth factor-beta3) decreased in the surrounding lung tissue in association with progression of COPD.
  
  
  CONCLUSIONS
  The progression of COPD is associated with the differential expression of a cluster of genes that favor the degradation of the tissue surrounding the small conducting airways.
authors.affiliation: The iCAPTURE Centre for Cardiovascular and Pulmonary Research and University of British Columbia, St. Paul's Hospital, 1081 Burrard Street, Vancouver, BC, Canada.
authors.forename: John V
authors.initials: JV
authors.lastname: Gosselink
authors.forename: Shizu
authors.initials: S
authors.lastname: Hayashi
authors.forename: W Mark
authors.initials: WM
authors.lastname: Elliott
authors.forename: Li
authors.initials: L
authors.lastname: Xing
authors.forename: Becky
authors.initials: B
authors.lastname: Chan
authors.forename: Luojia
authors.initials: L
authors.lastname: Yang
authors.forename: Claire
authors.initials: C
authors.lastname: Wright
authors.forename: Don
authors.initials: D
authors.lastname: Sin
authors.forename: Peter D
authors.initials: PD
authors.lastname: Paré
authors.forename: John A
authors.initials: JA
authors.lastname: Pierce
authors.forename: Richard A
authors.initials: RA
authors.lastname: Pierce
authors.forename: Alex
authors.initials: A
authors.lastname: Patterson
authors.forename: Joel
authors.initials: J
authors.lastname: Cooper
authors.forename: James C
authors.initials: JC
authors.lastname: Hogg
mesh_terms: D056151:Airway Remodeling / Q000235:genetics*; D004646:Emphysema / Q000235:genetics; D005541:Forced Expiratory Volume / Q000235:genetics; D015870:Gene Expression / Q000235:genetics*; D020869:Gene Expression Profiling / Q000379:methods; D006801:Humans; D042282:Microdissection / Q000379:methods; D008875:Middle Aged; D005810:Multigene Family / Q000235:genetics*; D016133:Polymerase Chain Reaction / Q000379:methods; D029424:Pulmonary Disease, Chronic Obstructive / Q000235:genetics*; D012720:Severity of Illness Index