Metabolic flux estimation using particle swarm optimization with penalty function.
Metabolic flux estimation through 13C trace experiment is crucial for quantifying the intracellular metabolic fluxes. In fact, it corresponds to a constrained optimization problem that minimizes a weighted distance between measured and simulated results. In this paper, we propose particle swarm optimization (PSO) with penalty function to solve 13C-based metabolic flux estimation problem. The stoichiometric constraints are transformed to an unconstrained one, by penalizing the constraints and building a single objective function, which in turn is minimized using PSO algorithm for flux quantification. The proposed algorithm is applied to estimate the central metabolic fluxes of Corynebacterium glutamicum. From simulation results, it is shown that the proposed algorithm has superior performance and fast convergence ability when compared to other existing algorithms.
Long
Hai-Xia
HX
School of Information Technology, Jiangnam University, Wuxi, Jiangsu 214122, China. haixia_long@163.com
Xu
Wen-Bo
WB
Sun
Jun
J
D000465:Algorithms; D048230:Corynebacterium glutamicum / Q000378:metabolism*; D008954:Models, Biological