Four distinct structural domains in Clostridium difficile toxin B visualized using SAXS.
Clostridium difficile is a nosocomial bacterial pathogen causing antibiotic-associated diarrhea and fatal pseudomembranous colitis. Key virulence factors are toxin A and toxin B (TcdB), two highly related toxins that are members of the large clostridial toxin family. These large multifunctional proteins disrupt cell function using a glucosyltransferase domain that is translocated into the cytosol after vesicular internalization of intact holotoxin. Although substantial information about the biochemical mechanisms of intoxication exists, research has been hampered by limited structural information, particularly of intact holotoxin. Here, we used small-angle X-ray scattering (SAXS) methods to obtain an ab initio low-resolution structure of native TcdB, which demonstrated that this molecule is monomeric in solution and possesses a highly asymmetric shape with a maximum dimension of approximately 275 A. Combining this SAXS information with crystallographic or modeled structures of individual functional domains of TcdB reveals for the first time that the three-dimensional structure of TcdB is organized into four distinct structural domains. Structures of the N-terminal glucosyltransferase, the cysteine protease, and the C-terminal repeat region can be aligned within three domains of the SAXS envelope. A fourth domain, predicted to be involved in the translocation of the glucosyltransferase, appears as a large solvent-exposed protrusion. Knowledge of the shapes and relative orientations of toxin domains provides new insight into defining functional domain boundaries and provides a framework for understanding how potential intra-domain interactions enable conformational changes to propagate between domains to facilitate intoxication processes.
Albesa-Jové
David
D
Department of Life Sciences, Division of Cell and Molecular Biology, Centre for Molecular Microbiology and Infection, Flowers Building, Exhibition Road, Imperial College London, London SW7 2AZ, UK.
Bertrand
Thomas
T
Carpenter
Elisabeth P
EP
Swain
Gemma V
GV
Lim
Jenson
J
Zhang
Jiancheng
J
Haire
Lesley F
LF
Vasisht
Nishi
N
Braun
Veit
V
Lange
Anton
A
von Eichel-Streiber
Christoph
C
Svergun
Dmitri I
DI
Fairweather
Neil F
NF
Brown
Katherine A
KA
D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics / Q000633:toxicity; D001427:Bacterial Toxins / Q000737:chemistry* / Q000235:genetics / Q000633:toxicity; D016360:Clostridioides difficile / Q000737:chemistry* / Q000235:genetics / Q000472:pathogenicity; D018360:Crystallography, X-Ray; D006801:Humans; D008958:Models, Molecular; D008969:Molecular Sequence Data; D017434:Protein Structure, Tertiary; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics; D020449:Repetitive Sequences, Amino Acid; D053838:Scattering, Small Angle; D017386:Sequence Homology, Amino Acid; D040681:Structural Homology, Protein; D014961:X-Ray Diffraction
D001426:Bacterial Proteins; D001427:Bacterial Toxins; D011994:Recombinant Proteins; C031815:toxB protein, Clostridium difficile