title: Whole genome expression profiling reveals a significant role for the cell junction and apoptosis pathways in breast cancer stem cells.
abstract: Side population (SP) cells in primary tumors and cell lines are a small cell population, but they are known to enrich cancer stem cells (CSCs). In this study, we isolated SP cells from the human breast cancer cell line MCF7 as a model for studying CSCs. Compared with non-SP cells, MCF7 SP cells had higher mammosphere-formation efficiency (MFE) in vitro and greater tumorigenicity in vivo, suggesting that MCF7 SP cells enrich CSCs. We first directly compared the gene expression profile of SP and non-SP cells from MCF7 cell line. Comparing the expression signature of SP to non-SP cells, we identified 753 differentially expressed genes (DEGs). Using Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, we identified multiple pathways that were aberrantly regulated in SP compared with non-SP cells. Several pathways, including cell junction and apoptosis, play important roles in breast CSC function. This study demonstrates that combining global gene expression analysis with detailed annotated pathway resources can enhance our understanding of the critical pathways that regulate breast CSCs.
authors.affiliation: Department of Radiotherapy, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. mingzhuhuang0718@163.com
authors.forename: Mingzhu
authors.initials: M
authors.lastname: Huang
authors.forename: Yuqing
authors.initials: Y
authors.lastname: Li
authors.forename: Guohua
authors.initials: G
authors.lastname: Wu
authors.forename: Fengchun
authors.initials: F
authors.lastname: Zhang
mesh_terms: D000818:Animals; D017209:Apoptosis / Q000235:genetics*; D014408:Biomarkers, Tumor / Q000235:genetics*; D001943:Breast Neoplasms / Q000235:genetics*; D045744:Cell Line, Tumor; D002874:Chromosome Mapping / Q000379:methods; D020869:Gene Expression Profiling / Q000379:methods; D016678:Genome / Q000235:genetics*; D007365:Intercellular Junctions / Q000235:genetics*; D051379:Mice; D016513:Mice, SCID; D015398:Signal Transduction / Q000235:genetics*; D013234:Stem Cells
chemical_list: D014408:Biomarkers, Tumor