Bifidobacterium stercoris sp. nov., isolated from human faeces.
Strain Eg1(T), an anaerobic, Gram-stain-positive, non-motile and non-spore-forming bacterium, was isolated from human faeces. The optimal temperature for growth was 37&emsp14;°C and tests for oxidase and catalase activities gave negative results. Fructose-6-phosphate phosphoketolase activity was detected. Acid was produced during fermentation of several substrates, including glucose. The end products of glucose fermentation were acetic acid and lactic acid, which were produced in a molar ratio of 1.76 : 1 (approximately 3 : 2). The G+C content was 57.8&emsp14;mol%. Comparative analysis of 16S rRNA gene sequences showed that strain Eg1(T) was closely related to Bifidobacterium adolescentis YIT 4011(T) (98.36 % 16S rRNA gene sequence similarity) and Bifidobacterium ruminantium JCM 8222(T) (97.93 %) and analysis of hsp60 sequences showed that strain Eg1(T) was closely related to B. adolescentis JCM 1275(T) (99.35 % hsp60 sequence similarity) and B. ruminantium JCM 8222(T) (92.13 %). However, despite these degrees of similarity being high enough for strain Eg1(T) to be included at the same species level as B. adolescentis and B. ruminantium (96.5-100 % for the genus Bifidobacterium), the isolate could be distinguished from B. adolescentis KCTC 3216(T) and B. ruminantium KCTC 3425(T) by low levels of DNA-DNA relatedness (41 and 17 %, respectively). Based on phenotypic, genotypic and phylogenetic analyses, we propose that strain Eg1(T) is classified in a novel species, Bifidobacterium stercoris sp. nov. The type strain is Eg1(T) (=KCTC 5756(T) =JCM 15918(T)).
Kim
Min-Soo
MS
Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Seoul 130-701, Republic of Korea.
Roh
Seong Woon
SW
Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Seoul 130-701, Republic of Korea.
Bae
Jin-Woo
JW
Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Seoul 130-701, Republic of Korea.
D000328:Adult; D000446:Aldehyde-Lyases / Q000378:metabolism; D015373:Bacterial Typing Techniques; D001482:Base Composition; D001644:Bifidobacterium / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D018834:Chaperonin 60 / Q000235:genetics; D004269:DNA, Bacterial / Q000235:genetics; D005227:Fatty Acids / Q000737:chemistry; D005243:Feces / Q000382:microbiology*; D006801:Humans; D008297:Male; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA
D018834:Chaperonin 60; D004269:DNA, Bacterial; D005227:Fatty Acids; D012336:RNA, Ribosomal, 16S; D000446:Aldehyde-Lyases; C065556:fructose-6-phosphate phosphoketolase