title: [Two CpG-islands of SEMA3B gene: methylation in clear cell renal cell carcinoma].
abstract: Earlier in some small cell lung (SCLC) and non-small cell lung carcinoma (NSCLC) cell lines, methylation of CpG-island was found in the SEMA3B region, which belongs to the first intron according to the NCBI data base (Build 36). The aim of this work was to study methylation of two SEMA3B CpG-islands: promoter and intronic in clear cell renal cell carcinoma (RCC). Using methyl specific PCR and bisulfite sequencing, it was shown for the first time that promoter CpG-island was methylated in RCC with high frequency 56% (34/61), and intronic CpG-island - with somewhat lower frequency 35% (17/48). Significant reverse correlation was estimated between mRNA level decrease and methylation of promoter CpG-island in RCC for the first time (P < or = 0.05 by Fisher's exact test), no correlation was determined for intronic CpG-island. This result suggested that methylation of promoter CpG-island contributed into inactivation of SEMA3B gene-suppressor in RCC.
authors.forename: V I
authors.initials: VI
authors.lastname: Loginov
authors.forename: D S
authors.initials: DS
authors.lastname: Khodyrev
authors.forename: I V
authors.initials: IV
authors.lastname: Pronina
authors.forename: A V
authors.initials: AV
authors.lastname: Maliukova
authors.forename: T P
authors.initials: TP
authors.lastname: Kazubskaia
authors.forename: V D
authors.initials: VD
authors.lastname: Ermilova
authors.forename: R F
authors.initials: RF
authors.lastname: Gar'kavtseva
authors.forename: E R
authors.initials: ER
authors.lastname: Zabarovskiĭ
authors.forename: E A
authors.initials: EA
authors.lastname: Braga
mesh_terms: D002292:Carcinoma, Renal Cell / Q000235:genetics / Q000378:metabolism*; D045744:Cell Line, Tumor; D018899:CpG Islands; D019175:DNA Methylation; D015972:Gene Expression Regulation, Neoplastic / Q000235:genetics; D006801:Humans; D007438:Introns / Q000235:genetics; D007680:Kidney Neoplasms / Q000235:genetics / Q000378:metabolism*; D008562:Membrane Glycoproteins / Q000096:biosynthesis* / Q000235:genetics; D011401:Promoter Regions, Genetic; D039961:Semaphorins / Q000096:biosynthesis* / Q000235:genetics; D025521:Tumor Suppressor Proteins / Q000096:biosynthesis* / Q000235:genetics
chemical_list: D008562:Membrane Glycoproteins; C409766:SEMA3B protein, human; D039961:Semaphorins; D025521:Tumor Suppressor Proteins