title: Asymmetry in the N-inversion of heteroarene imines: pyrimidin-4(3H)-imine, pyridin-2(1H)-imine, and 1H-purine-6(9H)-imine.
abstract: The uncatalyzed, thermal N-inversion reactions were studied of pyrimidin-4(3H)-imine (PMI), pyridin-2(1H)-imine (PYI), and 1H-purine-6(9H)-imine (PUI). Relevant regions of the potential energy surfaces were explored with second-order Moller-Plesset perturbation theory (MP2(full)/6-31G(d)) and with coupled cluster theory (CCSD/6-31G(d), CCSD/6-31+G(d)). The thermochemistry of stationary structures was evaluated at the MP2 level and their energies also were computed at the levels CCSD(T)/6-311+G(d,p) and CCSD(T)/6-311+G(2df,2p) and with structures optimized at lower CCSD levels. The best estimates for the (E)-preference free enthalpies DeltaG(298)(Z vs. E) are 2.6 (PMI), 2.3 (PYI), and 6.0 (PUI) kcal/mol and for the free enthalpies of activation DeltaG(298)(Z --> E) they are 21.6 (PMI), 21.1 (PYI) and 19.7 (PUI) kcal/mol. Nonplanar N-inversion transition state (ITS) structures occur along enantiomeric reaction paths and stationary structures for in-plane N-inversion correspond to second-order saddle points (SOSP) on the potential energy surface. The deformation energy DeltaE(def) = E(SOSP) - E(ITS) is less than 0.5 kcal/mol for PMI and PUI, but it is as high as DeltaE(def) approximately = 2 kcal/mol for PYI. The detailed study of structures and electronic structures along the entire N-inversion path of the isomerization (Z)-PMI <==> (E)-PMI revealed a remarkable stabilization due to asymmetry in the ascent region from the (E)-isomer to ITS. Structures in this region of the potential energy surface allow best for additional bonding overlaps in the HOMO, and this amidine effect predicts lower N-inversion barriers in analogous imines with (Z)-preference energies. The discussion of the halogen-bonded aggregate PMI x ClCH(3) exemplifies that the asymmetry in N-inversion paths is retained and perhaps even enhanced in chlorinated solvents of low polarity.
authors.affiliation: Department of Chemistry, University of Missouri, Columbia, Missouri 65211, USA. glaserr@missouri.edu
authors.forename: Rainer
authors.initials: R
authors.lastname: Glaser
authors.forename: Jian
authors.initials: J
authors.lastname: Yin
authors.forename: Stephanie
authors.initials: S
authors.lastname: Miller
mesh_terms: D003198:Computer Simulation; D007097:Imines / Q000737:chemistry*; D007536:Isomerism; D008956:Models, Chemical; D015394:Molecular Structure; D011687:Purines / Q000737:chemistry*; D011743:Pyrimidines / Q000737:chemistry*; D011789:Quantum Theory; D013237:Stereoisomerism; D013816:Thermodynamics
chemical_list: D007097:Imines; D011687:Purines; D011743:Pyrimidines