title: Assessment of DNA methylation at the interferon regulatory factor 5 (IRF5) promoter region in inflammatory bowel diseases.
abstract: OBJECTIVE
  A 5-bp insertion-deletion (indel) polymorphism in the promoter of interferon regulatory factor 5 (IRF5) has been associated with inflammatory bowel diseases (IBD). This polymorphism generates an additional binding site for the transcription factor SP1 and has been shown to augment the expression of IRF5. Additionally, it affects a CpG dinucleotide-dense genomic region. These features of the indel suggested that it may influence the epigenetic regulation of IRF5. The aim of this study was to investigate the potential effect of the 5-bp indel on the methylation pattern of four CpG sites upstream of the polymorphism. Possible CpG site methylation differences in this region between healthy persons and individuals suffering from IBD were also tested.
  
  
  METHODS
  Genotype was determined by 4% polyacrylamide gel electrophoresis in 33 peripheral blood leukocyte (PBL) DNA samples. DNA methylation correlates of the genotypes were measured by bisulfite pyrosequencing. IRF5 promoter methylation in association to disease state was assessed in 87 proband (49 healthy, 18 Crohn's disease, 20 ulcerative colitis) PBL samples.
  
  
  RESULTS
  The polymorphism did not affect the methylation pattern of the IRF5 promoter nor could we detect significant differences in the average, low methylation of the locus between healthy persons and individuals with IBD.
  
  
  CONCLUSIONS
  These results implicate that epigenetic dysregulation of the IRF5 promoter is unlikely to be associated with IBD.
authors.affiliation: Section of Pediatric Gastroenterology, Baylor College of Medicine, Houston, TX 77030-2399, USA.
authors.forename: Alfred
authors.initials: A
authors.lastname: Balasa
authors.forename: Grace
authors.initials: G
authors.lastname: Gathungu
authors.forename: Peter
authors.initials: P
authors.lastname: Kisfali
authors.forename: E O'Brian
authors.initials: EO
authors.lastname: Smith
authors.forename: Judy H
authors.initials: JH
authors.lastname: Cho
authors.forename: Bela
authors.initials: B
authors.lastname: Melegh
authors.forename: Richard
authors.initials: R
authors.lastname: Kellermayer
mesh_terms: D000328:Adult; D018899:CpG Islands / Q000235:genetics; D019175:DNA Methylation / Q000235:genetics*; D005260:Female; D006801:Humans; D054643:INDEL Mutation / Q000235:genetics; D015212:Inflammatory Bowel Diseases / Q000235:genetics*; D050835:Interferon Regulatory Factors / Q000235:genetics*; D008297:Male; D011401:Promoter Regions, Genetic / Q000235:genetics*
chemical_list: C431713:IRF5 protein, human; D050835:Interferon Regulatory Factors