Ion conduction in ligand-gated ion channels: Brownian dynamics studies of four recent crystal structures.
Four x-ray crystal structures of prokaryotic homologs of ligand-gated ion channels have recently been determined: ELIC from Erwinia chrysanthemi, two structures of a proton-activated channel from Gloebacter violaceus (GLIC1 and GLIC2) and that of the E221A mutant (GLIC1M). The availability of numerous structures of channels in this family allows for aspects of channel gating and ion conduction to be examined. Here, we determine the likely conduction states of the four structures as well as IV curves, ion selectivity, and steps involved in ion permeation by performing extensive Brownian dynamics simulations. Our results show that the ELIC structure is indeed nonconductive, but that GLIC1 and GLIC1M are both conductive of ions with properties different from those seen in experimental studies of the channel. GLIC2 appears to reflect an open state of the channel with a predicted conductance of 10.8-12.4 pS in 140 mM NaCl solution, which is comparable to the experimental value 8 +/- 2 pS. The extracellular domain of the channel is shown to have an important influence on the channel current, but a less significant role in ion selectivity.
School of Biomedical, Biomolecular and Chemical Sciences, The University of Western Australia, Crawley, Western Australia.
Chen
C
Song
Ben
B
Corry
D001426:Bacterial Proteins / Q000737:chemistry*; D002712:Chlorides / Q000737:chemistry*; D003198:Computer Simulation; D000458:Cyanobacteria; D016974:Dickeya chrysanthemi; D007473:Ion Channels / Q000737:chemistry*; D007477:Ions / Q000737:chemistry*; D008956:Models, Chemical; D008958:Models, Molecular; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D012964:Sodium / Q000737:chemistry*
D001426:Bacterial Proteins; D002712:Chlorides; D007473:Ion Channels; D007477:Ions; D012964:Sodium