The bioisosteric similarity of the tetrazole and carboxylate anions: clues from the topologies of the electrostatic potential and of the electron density.
There is a need for an a priori method with which to demonstrate the physical similarities between non-classical bioisosteres. In this study we explore the utility of the electron density and the electrostatic potential as the basis for a systematic investigation of the physical and chemical similarities between bioisosteres. The tetrazole and carboxylate bioisosteric pair is used as an illustrative example. It is shown that tetrazole and carboxylate anions give rise to electrostatic potentials (ESP) that exhibit a remarkable local similarity in the disposition of four coplanar local minima at positions consistent with lone pairs. The similarity of the disposition of these ESP minima generated by the two bioisosteres is in sharp contrast with their differences in the number and types of atoms, their nuclear geometrical arrangements, their total volumes, their partial charges, and their electron populations. The topology and geometrical disposition of these minima are shown to be independent of the capping group used in the model, and thus an inherent property of this bioisosteric pair. A model of the receptor region responsible for binding to either of these bioisosteres is proposed on the basis of an electrostatic "lock-and-key".
Department of Chemistry and Physics, Mount Saint Vincent University, Halifax, Nova Scotia, Canada B3M 2J6; Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3. cherif.matta@msvu.ca
Chérif F
CF
Matta
Alya A
AA
Arabi
Donald F
DF
Weaver
D000838:Anions / Q000737:chemistry; D002264:Carboxylic Acids / Q000737:chemistry*; D003198:Computer Simulation; D004583:Electrons; D008956:Models, Chemical; D055672:Static Electricity; D013777:Tetrazoles / Q000737:chemistry*
D000838:Anions; D002264:Carboxylic Acids; D013777:Tetrazoles; C045574:1H-tetrazole