Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences.
Species identification of five Dendrobium plants was conducted using phylogenetic analysis and the validity of the method was verified. Some Dendrobium plants (Orchidaceae) have been used as herbal medicines but the difficulty in identifying their botanical origin by traditional methods prevented their full modern utilization. Based on the emerging field of molecular systematics as a powerful classification tool, a phylogenetic analysis was conducted using sequences of two plastid genes, the maturase-coding gene (matK) and the large subunit of ribulose 1,5-bisphosphate carboxylase-coding gene (rbcL), as DNA barcodes for species identification of Dendrobium plants. We investigated five medicinal Dendrobium species, Dendrobium fimbriatum, D. moniliforme, D. nobile, D. pulchellum, and D. tosaense. The phylogenetic trees constructed from matK data successfully distinguished each species from each other. On the other hand, rbcL, as a single-locus barcode, offered less species discriminating power than matK, possibly due to its being present with little variation. When results using matK sequences of D. officinale that was deposited in the DNA database were combined, D. officinale and D. tosaense showed a close genetic relationship, which brought us closer to resolving the question of their taxonomic identity. Identification of the plant source as well as the uniformity of the chemical components is critical for the quality control of herbal medicines and it is important that the processed materials be validated. The methods presented here could be applied to the analysis of processed Dendrobium plants and be a promising tool for the identification of botanical origins of crude drugs.
Laboratory of Food Chemistry, Faculty of Humanities and Sciences, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo, Japan. asahina.haruka@ocha.ac.jp
Haruka
H
Asahina
Junichi
J
Shinozaki
Kazuo
K
Masuda
Yasujiro
Y
Morimitsu
Motoyoshi
M
Satake
D018744:DNA, Plant / Q000235:genetics*; D031667:Dendrobium / Q000235:genetics*; D004365:Drugs, Chinese Herbal / Q000302:isolation & purification; D004722:Endoribonucleases / Q000235:genetics*; D009713:Nucleotidyltransferases / Q000235:genetics*; D010802:Phylogeny; D018515:Plant Leaves / Q000235:genetics; D018547:Plant Stems / Q000235:genetics; D012273:Ribulose-Bisphosphate Carboxylase / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods
D018744:DNA, Plant; D004365:Drugs, Chinese Herbal; D009713:Nucleotidyltransferases; C034038:mRNA maturase; D004722:Endoribonucleases; C101625:RbcL protein, plastid; D012273:Ribulose-Bisphosphate Carboxylase