Genetic and functional dissection of HTRA1 and LOC387715 in age-related macular degeneration.
A common haplotype on 10q26 influences the risk of age-related macular degeneration (AMD) and encompasses two genes, LOC387715 and HTRA1. Recent data have suggested that loss of LOC387715, mediated by an insertion/deletion (in/del) that destabilizes its message, is causally related with the disorder. Here we show that loss of LOC387715 is insufficient to explain AMD susceptibility, since a nonsense mutation (R38X) in this gene that leads to loss of its message resides in a protective haplotype. At the same time, the common disease haplotype tagged by the in/del and rs11200638 has an effect on the transcriptional upregulation of the adjacent gene, HTRA1. These data implicate increased HTRA1 expression in the pathogenesis of AMD and highlight the importance of exploring multiple functional consequences of alleles in haplotypes that confer susceptibility to complex traits.
Yang
Zhenglin
Z
Center for Human Molecular Biology and Genetics, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, Chengdu, Sichuan, China.
Tong
Zongzhong
Z
Chen
Yuhong
Y
Zeng
Jiexi
J
Lu
Fang
F
Sun
Xufang
X
Zhao
Chao
C
Wang
Kevin
K
Davey
Lisa
L
Chen
Haoyu
H
London
Nyall
N
Muramatsu
Daisuke
D
Salasar
Francesca
F
Carmona
Ruben
R
Kasuga
Daniel
D
Wang
Xiaolei
X
Bedell
Matthew
M
Dixie
Manjuxia
M
Zhao
Peiquan
P
Yang
Ruifu
R
Gibbs
Daniel
D
Liu
Xiaoqi
X
Li
Yan
Y
Li
Cai
C
Li
Yuanfeng
Y
Campochiaro
Betsy
B
Constantine
Ryan
R
Zack
Donald J
DJ
Campochiaro
Peter
P
Fu
Yinbin
Y
Li
Dean Y
DY
Katsanis
Nicholas
N
Zhang
Kang
K
D000368:Aged; D016022:Case-Control Studies; D002879:Chromosomes, Human, Pair 10 / Q000235:genetics; D015331:Cohort Studies; D057075:Enzyme Assays; D005260:Female; D005786:Gene Expression Regulation; D020022:Genetic Predisposition to Disease; D006239:Haplotypes / Q000235:genetics; D000074289:High-Temperature Requirement A Serine Peptidase 1; D006801:Humans; D008156:Luciferases / Q000378:metabolism; D008268:Macular Degeneration / Q000235:genetics*; D008297:Male; D020641:Polymorphism, Single Nucleotide / Q000235:genetics; D011506:Proteins / Q000235:genetics* / Q000378:metabolism; D012697:Serine Endopeptidases / Q000235:genetics* / Q000378:metabolism; D014589:Utah
C514392:ARMS2 protein, human; D011506:Proteins; D008156:Luciferases; D000074289:High-Temperature Requirement A Serine Peptidase 1; C474012:HTRA1 protein, human; D012697:Serine Endopeptidases