title: A mathematical modelling framework for elucidating the role of feedback control in translation termination.
abstract: Translation is the final stage of gene expression where messenger RNA is used as a template for protein polymerization from appropriate amino acids. Release of the completed protein requires a release factor protein acting at the termination/stop codon to liberate it. In this paper we focus on a complex feedback control mechanism involved in the translation and synthesis of release factor proteins, which has been observed in different systems. These release factor proteins are involved in the termination stage of their own translation. Further, mutations in the release factor gene can result in a premature stop codon. In this case translation can result either in early termination and the production of a truncated protein or readthrough of the premature stop codon and production of the complete release factor protein. Thus during translation of the release factor mRNA containing a premature stop codon, the full length protein negatively regulates its production by its action on a premature stop codon, while positively regulating its production by its action on the regular stop codon. This paper develops a mathematical modelling framework to investigate this complex feedback control system involved in translation. A series of models is established to carefully investigate the role of individual mechanisms and how they work together. The steady state and dynamic behaviour of the resulting models are examined both analytically and numerically.
authors.affiliation: Department of Chemical Engineering and Chemical Technology, Centre for Process Systems Engineering, Institute for Systems and Synthetic Biology, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
authors.forename: Eric
authors.initials: E
authors.lastname: de Silva
authors.forename: J
authors.initials: J
authors.lastname: Krishnan
authors.forename: Russell
authors.initials: R
authors.lastname: Betney
authors.forename: Ian
authors.initials: I
authors.lastname: Stansfield
mesh_terms: D000465:Algorithms; D018389:Codon, Nonsense / Q000235:genetics; D004926:Escherichia coli / Q000235:genetics; D029968:Escherichia coli Proteins / Q000096:biosynthesis / Q000235:genetics; D025461:Feedback, Physiological / Q000502:physiology*; D005786:Gene Expression Regulation / Q000502:physiology; D008957:Models, Genetic; D009154:Mutation; D010443:Peptide Chain Termination, Translational / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics
chemical_list: D018389:Codon, Nonsense; D029968:Escherichia coli Proteins; D012333:RNA, Messenger