DHPLC can be used to detect low-level mutations in amyotrophic lateral sclerosis.
Somatic mutations have been suggested as a cause of sporadic amyotrophic lateral sclerosis (SALS). These mutations can be difficult to detect since they may involve only a small percentage of cells within the tissue, so we devised a method to detect low mutation levels in brain DNA. Different proportions of a known SOD1 mutation were prepared to determine the sensitivity of DHPLC. The fraction containing the mutant signal was collected and re-amplified ('enriched') to increase sensitivity and to dideoxy sequence the mutation. The combined technique was used to screen all exons and the promoter of SOD1 in 23 SALS brains. DHPLC could detect a known SOD1 mutation in 5% of a sample of brain tissue. Using our enrichment technique doubled the height of the mutant sequencing signal, which allowed identification of an unknown mutation in 10% of brain tissue. No SOD1 mutations were found in the SALS brains using this technique. In conclusion, combining DHPLC and sequencing doubles the sensitivity of sequencing alone and can detect low levels of known and unknown mutations in brain DNA. No SALS SOD1 somatic mutations were detected, but DHPLC would be useful in looking for somatic mutations in other SALS candidate genes.
Luquin
Natasha
N
Department of Molecular and Clinical Genetics, Royal Prince Alfred Hospital, Sydney, Australia.
Yu
Bing
B
Trent
Ronald J
RJ
Pamphlett
Roger
R
D000368:Aged; D000690:Amyotrophic Lateral Sclerosis / Q000235:genetics*; D001921:Brain / Q000502:physiology*; D002851:Chromatography, High Pressure Liquid / Q000379:methods* / Q000592:standards; D004252:DNA Mutational Analysis / Q000379:methods* / Q000592:standards; D005260:Female; D005820:Genetic Testing / Q000379:methods / Q000592:standards; D020180:Heteroduplex Analysis; D006801:Humans; D008297:Male; D008875:Middle Aged; D009691:Nucleic Acid Denaturation; D016133:Polymerase Chain Reaction; D012680:Sensitivity and Specificity; D013482:Superoxide Dismutase / Q000235:genetics; D000072105:Superoxide Dismutase-1
C000606290:SOD1 protein, human; D013482:Superoxide Dismutase; D000072105:Superoxide Dismutase-1