title: A new isolate of beak and feather disease virus from endemic wild red-fronted parakeets (Cyanoramphus novaezelandiae) in New Zealand.
abstract: Psittacine beak and feather disease (PBFD) is a viral disease distributed worldwide with a potentially critical impact on many rare parrots. While efforts have been made to determine its prevalence in wild and captive psittacines, only limited work has been done to document complete genomes of its causative agent, beak and feather disease virus (BFDV). Here, we describe five full genomes of BFDV isolated from wild specimens of an endemic New Zealand parrot, the red-fronted parakeet (Cyanoramphus novaezelandiae). The isolates share >99% nucleotide similarity amongst themselves and approximately 91-92% similarity to BFDV isolates from southern Africa, Europe and Australia. A maximum-likelihood (ML) phylogenetic tree including 42 other full-genome sequences indicated that the five isolates from red-fronted parakeets represent an undescribed genotype of BFDV. These isolates are evolutionarily most closely related to the Cacatuini isolates from Thailand and the Lorinae isolates from Australia in the rep gene ML tree; however, in the cp ML tree, the evolutionary relationship is closer to viruses found in the Psittacini.
authors.affiliation: Ecology and Conservation Lab, Institute of Natural Sciences, Massey University, Auckland Campus, Private Bag 102904, North Shore Mail Centre, Auckland, New Zealand.
authors.forename: Luis
authors.initials: L
authors.lastname: Ortiz-Catedral
authors.forename: Brigitta
authors.initials: B
authors.lastname: Kurenbach
authors.forename: Melanie
authors.initials: M
authors.lastname: Massaro
authors.forename: Kate
authors.initials: K
authors.lastname: McInnes
authors.forename: Dianne H
authors.initials: DH
authors.lastname: Brunton
authors.forename: Mark E
authors.initials: ME
authors.lastname: Hauber
authors.forename: Darren P
authors.initials: DP
authors.lastname: Martin
authors.forename: Arvind
authors.initials: A
authors.lastname: Varsani
mesh_terms: D000818:Animals; D001715:Bird Diseases / Q000821:virology*; D018173:Circoviridae Infections / Q000662:veterinary* / Q000821:virology; D017925:Circovirus / Q000145:classification* / Q000302:isolation & purification*; D016000:Cluster Analysis; D004279:DNA, Viral / Q000737:chemistry / Q000235:genetics; D016679:Genome, Viral; D008969:Molecular Sequence Data; D009520:New Zealand; D010311:Parrots / Q000821:virology*; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D012689:Sequence Homology, Nucleic Acid
chemical_list: D004279:DNA, Viral