Evolving generalized Voronoi diagrams for accurate cellular image segmentation.
Analyzing cellular morphologies on a cell-by-cell basis is vital for drug discovery, cell biology, and many other biological studies. Interactions between cells in their culture environments cause cells to touch each other in acquired microscopy images. Because of this phenomenon, cell segmentation is a challenging task, especially when the cells are of similar brightness and of highly variable shapes. The concept of topological dependence and the maximum common boundary (MCB) algorithm are presented in our previous work (Yu et al., Cytometry Part A 2009;75A:289-297). However, the MCB algorithm suffers a few shortcomings, such as low computational efficiency and difficulties in generalizing to higher dimensions. To overcome these limitations, we present the evolving generalized Voronoi diagram (EGVD) algorithm. Utilizing image intensity and geometric information, EGVD preserves topological dependence easily in both 2D and 3D images, such that touching cells can be segmented satisfactorily. A systematic comparison with other methods demonstrates that EGVD is accurate and much more efficient.
Yu
Weimiao
W
Bioinformatics Institute (BII), 30 Biopolis Street, #07-01, Matrix, Singapore 138671. yuwm@bii.a-star.edu.sg
Lee
Hwee Kuan
HK
Hariharan
Srivats
S
Bu
Wenyu
W
Ahmed
Sohail
S
D000465:Algorithms; D000818:Animals; D002452:Cell Count; D045744:Cell Line, Tumor; D002469:Cell Separation; D002477:Cells / Q000378:metabolism*; D021621:Imaging, Three-Dimensional / Q000379:methods*; D051379:Mice; D015203:Reproducibility of Results; D013997:Time Factors