title: The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.
abstract: Termination of RNA polymerase II (RNAPII) transcription of protein-coding genes occurs downstream of cleavage/polyadenylation sites. According to the "torpedo" model, the 5'-3' exonuclease Rat1p/Xrn2p attacks the newly formed 5' end of the cleaved pre-mRNA, causing the still transcribing RNAPII to terminate. Here we demonstrate a similar role of S. cerevisiae Rat1p within the gene body. We find that the transcription processivity defect imposed on RNAPII by the rpb1-N488D mutation is corrected upon Rat1p inactivation. Importantly, Rat1p-dependent transcription termination occurs upstream the polyadenylation site. Genetic and biochemical evidence demonstrate that mRNA capping is defective in rpb1-N488D cells, which leads to increased levels of Rat1p all along the gene locus. Consistently, Rat1p-dependent RNAPII termination is also observed in the capping-deficient ceg1-63 strain. Our data suggest that Rat1p serves to terminate RNAPII molecules engaged in the production of uncapped RNA, regardless of their position on the gene locus.
authors.affiliation: Centre for mRNP Biogenesis and Metabolism, Department of Molecular Biology, Aarhus University, Aarhus DK-8000, Denmark.
authors.forename: Silvia
authors.initials: S
authors.lastname: Jimeno-González
authors.forename: Line Lindegaard
authors.initials: LL
authors.lastname: Haaning
authors.forename: Francisco
authors.initials: F
authors.lastname: Malagon
authors.forename: Torben Heick
authors.initials: TH
authors.lastname: Jensen
mesh_terms: D005095:Exoribonucleases / Q000235:genetics / Q000378:metabolism*; D015966:Gene Expression Regulation, Fungal; D009713:Nucleotidyltransferases / Q000235:genetics / Q000378:metabolism; D012315:RNA Caps / Q000096:biosynthesis* / Q000235:genetics; D012319:RNA Polymerase II / Q000235:genetics / Q000378:metabolism*; D012441:Saccharomyces cerevisiae / Q000201:enzymology* / Q000235:genetics; D029701:Saccharomyces cerevisiae Proteins / Q000235:genetics / Q000378:metabolism*; D014158:Transcription, Genetic; D000098556:mRNA Guanylyltransferases
chemical_list: D012315:RNA Caps; D029701:Saccharomyces cerevisiae Proteins; C075577:RAT1 protein, S cerevisiae; D009713:Nucleotidyltransferases; D012319:RNA Polymerase II; C511736:RPB1 protein, S cerevisiae; D000098556:mRNA Guanylyltransferases; D005095:Exoribonucleases