Personal genome sequencing: current approaches and challenges.
The revolution in DNA sequencing technologies has now made it feasible to determine the genome sequences of many individuals; i.e., "personal genomes." Genome sequences of cells and tissues from both normal and disease states have been determined. Using current approaches, whole human genome sequences are not typically assembled and determined de novo, but, instead, variations relative to a reference sequence are identified. We discuss the current state of personal genome sequencing, the main steps involved in determining a genome sequence (i.e., identifying single-nucleotide polymorphisms [SNPs] and structural variations [SVs], assembling new sequences, and phasing haplotypes), and the challenges and performance metrics for evaluating the accuracy of the reconstruction. Finally, we consider the possible individual and societal benefits of personal genome sequences.
Snyder
Michael
M
Department of Genetics, Stanford University School of Medicine, California 94305, USA. mpsnyder@stanford.edu
Du
Jiang
J
Gerstein
Mark
M
D030661:Genetic Privacy / Q000191:economics / Q000941:ethics / Q000639:trends*; D014644:Genetic Variation; D015894:Genome, Human / Q000235:genetics*; D006801:Humans; D012015:Reference Standards; D015203:Reproducibility of Results; D017422:Sequence Analysis, DNA / Q000379:methods / Q000592:standards / Q000639:trends