Stenotrophomonas panacihumi sp. nov., isolated from soil of a ginseng field.
The study isolated a Gram-negative, rod-shaped, non-motile bacterium from the soil of a ginseng field in Daejeon, South Korea and characterized it to determine its taxonomic position. Phylogenetic analysis, based on the 16S rRNA gene sequence, revealed that strain MK06(T) belongs to the family Xanthomonadacea, and showed the highest degree of sequence similarity to Stenotrophomonas rhizophila e-p10(T) (98.6%), Xanthomonas campestris LMG 568T (98.0%), Stenotrophomonas maltophilia ATCC 1d3637(T) (97.3%), and Stenotrophomonas humi R-32729(T) (96.9%). Chemotaxonomic data revealed that strain MK06(T) possesses ubiquinone Q-8 as the predominant respiratory lipoquinone, which is common in the genus Stenotrophomonas, and that the predominant fatty acids were 15:0 iso (41.1%), 15:0 anteiso (12.6%), and 17:1 iso omega9c (8.6%). The results of physiological and biochemical tests clearly demonstrated that strain MK06(T) represents a distinct species and supported its affiliation with the genus Stenotrophomonas. Based on these data, MK06(T) (KCTC, 22893(T); JCM, 16536(T); KEMB, 9004-002(T)) should be classified as the type strain for a novel species, for which we propose the name Stenotrophomonas panacihumi sp. nov.
Yi
Hoonbok
H
Department of Bio and Environmental Technology, Division of Environmental and Life Science, College of Natural Science, Seoul Women's University, Seoul, Republic of Korea.
Srinivasan
Sathiyaraj
S
Kim
Myung Kyum
MK
D002338:Carotenoids / Q000032:analysis; D005227:Fatty Acids / Q000032:analysis; D005798:Genes, Bacterial; D005894:Panax; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D056910:Republic of Korea; D012988:Soil Microbiology; D020588:Stenotrophomonas / Q000737:chemistry / Q000145:classification / Q000235:genetics / Q000302:isolation & purification*
D005227:Fatty Acids; D012336:RNA, Ribosomal, 16S; D002338:Carotenoids