title: Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data.
abstract: Recent improvements in proteomic technologies have collectively yielded data sets that far exceed the capabilities of typical low-throughput interpretation strategies. Unfortunately, tools designed to leverage the "peptide-centric" content of MS-based proteomics lag the current rate of data production. Here, we describe Pathway Palette (http://blaispathways.dfci.harvard.edu), a freely accessible internet application that enables researchers to easily transition from peptides to biological pathways, while simultaneously retaining the qualitative and quantitative aspects of the underlying MS data.
authors.affiliation: Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115-6084, USA.
authors.forename: Manor
authors.initials: M
authors.lastname: Askenazi
authors.forename: Shaojuan
authors.initials: S
authors.lastname: Li
authors.forename: Saurav
authors.initials: S
authors.lastname: Singh
authors.forename: Jarrod A
authors.initials: JA
authors.lastname: Marto
mesh_terms: D000595:Amino Acid Sequence; D020407:Internet; D013058:Mass Spectrometry / Q000379:methods*; D008969:Molecular Sequence Data; D010455:Peptides / Q000032:analysis*; D011506:Proteins / Q000032:analysis*; D040901:Proteomics / Q000379:methods*
chemical_list: D010455:Peptides; D011506:Proteins