title: Putative cis-regulatory elements associated with heat shock genes activated during excystation of Cryptosporidium parvum.
abstract: BACKGROUND
  Cryptosporidiosis is a ubiquitous infectious disease, caused by the protozoan parasites Cryptosporidium hominis and C. parvum, leading to acute, persistent and chronic diarrhea worldwide. Although the complications of this disease can be serious, even fatal, in immunocompromised patients of any age, they have also been found to lead to long term effects, including growth inhibition and impaired cognitive development, in infected immunocompetent children. The Cryptosporidium life cycle alternates between a dormant stage, the oocyst, and a highly replicative phase that includes both asexual vegetative stages as well as sexual stages, implying fine genetic regulatory mechanisms. The parasite is extremely difficult to study because it cannot be cultured in vitro and animal models are equally challenging. The recent publication of the genome sequence of C. hominis and C. parvum has, however, significantly advanced our understanding of the biology and pathogenesis of this parasite.
  
  
  RESULTS
  Herein, our goal was to identify cis-regulatory elements associated with heat shock response in Cryptosporidium using a combination of in silico and real time RT-PCR strategies. Analysis with Gibbs-Sampling algorithms of upstream non-translated regions of twelve genes annotated as heat shock proteins in the Cryptosporidium genome identified a highly conserved over-represented sequence motif in eleven of them. RT-PCR analyses, described herein and also by others, show that these eleven genes bearing the putative element are induced concurrent with excystation of parasite oocysts via heat shock.
  
  
  CONCLUSIONS
  Our analyses suggest that occurrences of a motif identified in the upstream regions of the Cryptosporidium heat shock genes represent parts of the transcriptional apparatus and function as stress response elements that activate expression of these genes during excystation, and possibly at other stages in the life cycle of the parasite. Since heat shock and excystation represent a critical step in the development of the infectious sporozoite form of Cryptosporidium, these results provide important insight into the pathogenicity of the parasite.
authors.affiliation: Department of Microbiology and Immunology, Virginia Commonwealth University, Richmond, Virginia, United States of America.
authors.forename: Benjamin
authors.initials: B
authors.lastname: Cohn
authors.forename: Patricio
authors.initials: P
authors.lastname: Manque
authors.forename: Ana M
authors.initials: AM
authors.lastname: Lara
authors.forename: Myrna
authors.initials: M
authors.lastname: Serrano
authors.forename: Nihar
authors.initials: N
authors.lastname: Sheth
authors.forename: Gregory
authors.initials: G
authors.lastname: Buck
mesh_terms: D000465:Algorithms; D020816:Amino Acid Motifs; D000818:Animals; D019295:Computational Biology; D016785:Cryptosporidium parvum / Q000378:metabolism*; D005786:Gene Expression Regulation; D016678:Genome; D006360:Heat-Shock Proteins / Q000378:metabolism*; D018869:Heat-Shock Response; D008957:Models, Genetic; D033661:Oocysts / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D034101:Sporozoites / Q000378:metabolism
chemical_list: D006360:Heat-Shock Proteins