title: GeneDesign 3.0 is an updated synthetic biology toolkit.
abstract: GeneDesign is a set of web applications that provides public access to a nucleotide manipulation pipeline for synthetic biology. The server is public and freely accessible, and the source is available for download under the New BSD License. Since GeneDesign was published and made publicly available 3 years ago, we have made its code base more efficient, added several algorithms and modules, updated the restriction enzyme library, added batch processing capabilities, and added several command line modules, all of which we briefly describe here.
authors.affiliation: McKusick-Nathans Institute of Genetic Medicine, High Throughput Biology Center, Johns Hopkins University School of Medicine, 733 North Broadway, Baltimore, MD 21205, USA. notadoctor@jhmi.edu
authors.forename: Sarah M
authors.initials: SM
authors.lastname: Richardson
authors.forename: Paul W
authors.initials: PW
authors.lastname: Nunley
authors.forename: Robert M
authors.initials: RM
authors.lastname: Yarrington
authors.forename: Jef D
authors.initials: JD
authors.lastname: Boeke
authors.forename: Joel S
authors.initials: JS
authors.lastname: Bader
mesh_terms: D003062:Codon; D003196:Computer Graphics; D004262:DNA Restriction Enzymes; D005813:Genes, Synthetic; D020407:Internet; D012984:Software
chemical_list: D003062:Codon; D004262:DNA Restriction Enzymes