title: Analysis of biological time-lapse microscopic experiment from the point of view of the information theory.
abstract: We report objective analysis of information in the microscopic image of the cell monolayer. The process of transfer of information about the cell by the microscope is analyzed in terms of the classical Shannon information transfer scheme. The information source is the biological object, the information transfer channel is the whole microscope including the camera chip. The destination is the model of biological system. The information contribution is analyzed as information carried by a point to overall information in the image. Subsequently we obtain information reflection of the biological object. This is transformed in the biological model which, in information terminology, is the destination. This, we propose, should be constructed as state transitions in individual cells modulated by information bonds between the cells. We show examples of detected cell states in multidimensional state space reflected in space an colour channel intensity phenomenological state space. We have also observed information bonds and show examples of them.
authors.affiliation: Institute of Physical Biology, University of South Bohemia, Academic and University Center, Zámek 136, 373 33 Nové Hrady, Czech Republic. stys@jcu.cz
authors.forename: Dalibor
authors.initials: D
authors.lastname: Stys
authors.forename: Jan
authors.initials: J
authors.lastname: Urban
authors.forename: Jan
authors.initials: J
authors.lastname: Vanek
authors.forename: Petr
authors.initials: P
authors.lastname: Císar