Tuning and controlling gene expression noise in synthetic gene networks.
Synthetic gene networks can be used to control gene expression and cellular phenotypes in a variety of applications. In many instances, however, such networks can behave unreliably due to gene expression noise. Accordingly, there is a need to develop systematic means to tune gene expression noise, so that it can be suppressed in some cases and harnessed in others, e.g. in cellular differentiation to create population-wide heterogeneity. Here, we present a method for controlling noise in synthetic eukaryotic gene expression systems, utilizing reduction of noise levels by TATA box mutations and noise propagation in transcriptional cascades. Specifically, we introduce TATA box mutations into promoters driving TetR expression and show that these mutations can be used to effectively tune the noise of a target gene while decoupling it from the mean, with negligible effects on the dynamic range and basal expression. We apply mathematical and computational modeling to explain the experimentally observed effects of TATA box mutations. This work, which highlights some important aspects of noise propagation in gene regulatory cascades, has practical implications for implementing gene expression control in synthetic gene networks.
Murphy
Kevin F
KF
Department of Biomedical Engineering, Howard Hughes Medical Institute, Center for BioDynamics & Center for Advanced Biotechnology, Department of Biology, Boston University, Boston, MA 02215, USA.
Adams
Rhys M
RM
Wang
Xiao
X
Balázsi
Gábor
G
Collins
James J
JJ
D005786:Gene Expression Regulation; D053263:Gene Regulatory Networks; D005813:Genes, Synthetic; D009154:Mutation; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism; D029701:Saccharomyces cerevisiae Proteins / Q000378:metabolism; D016385:TATA Box; D015534:Trans-Activators / Q000378:metabolism; D014158:Transcription, Genetic
C518355:GAL10 protein, S cerevisiae; D029701:Saccharomyces cerevisiae Proteins; D015534:Trans-Activators