Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data.
Recent improvements in proteomic technologies have collectively yielded data sets that far exceed the capabilities of typical low-throughput interpretation strategies. Unfortunately, tools designed to leverage the "peptide-centric" content of MS-based proteomics lag the current rate of data production. Here, we describe Pathway Palette (http://blaispathways.dfci.harvard.edu), a freely accessible internet application that enables researchers to easily transition from peptides to biological pathways, while simultaneously retaining the qualitative and quantitative aspects of the underlying MS data.
Askenazi
Manor
M
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115-6084, USA.
Li
Shaojuan
S
Singh
Saurav
S
Marto
Jarrod A
JA
D000595:Amino Acid Sequence; D020407:Internet; D013058:Mass Spectrometry / Q000379:methods*; D008969:Molecular Sequence Data; D010455:Peptides / Q000032:analysis*; D011506:Proteins / Q000032:analysis*; D040901:Proteomics / Q000379:methods*
D010455:Peptides; D011506:Proteins