A preliminary approach to creating an overview of lactoferrin multi-functionality utilizing a text mining method.
Lactoferrin is a multi-functional metal-binding glycoprotein that exhibits many biological functions of interest to many researchers from the fields of clinical medicine, dentistry, pharmacology, veterinary medicine, nutrition and milk science. To date, a number of academic reports concerning the biological activities of lactoferrin have been published and are easily accessible through public data repositories. However, as the literature is expanding daily, this presents challenges in understanding the larger picture of lactoferrin function and mechanisms. In order to overcome the "analysis paralysis" associated with lactoferrin information, we attempted to apply a text mining method to the accumulated lactoferrin literature. To this end, we used the information extraction system GENPAC (provided by Nalapro Technologies Inc., Tokyo). This information extraction system uses natural language processing and text mining technology. This system analyzes the sentences and titles from abstracts stored in the PubMed database, and can automatically extract binary relations that consist of interactions between genes/proteins, chemicals and diseases/functions. We expect that such information visualization analysis will be useful in determining novel relationships among a multitude of lactoferrin functions and mechanisms. We have demonstrated the utilization of this method to find pathways of lactoferrin participation in neovascularization, Helicobacter pylori attack on gastric mucosa, atopic dermatitis and lipid metabolism.
Shimazaki
Kei-ichi
K
Hokkaido University, Sapporo, Japan. simazaki@anim.agr.hokudai.ac.jp
Kushida
Tatsuya
T
D057225:Data Mining / Q000379:methods*; D003876:Dermatitis, Atopic / Q000378:metabolism; D016480:Helicobacter pylori / Q000472:pathogenicity; D006801:Humans; D007781:Lactoferrin / Q000235:genetics / Q000276:immunology / Q000378:metabolism*; D050356:Lipid Metabolism; D018919:Neovascularization, Physiologic
D007781:Lactoferrin