SAXS-data-based structural modeling of DNA-gadolinium complexes fixed in particles of cholesteric liquid-crystalline dispersions.
Structure of cholesteric liquid-crystalline dispersions (CLCDs) formed by double-stranded DNA molecules and treated with gadolinium salts was studied by small-angle X-ray scattering (SAXS). The obtained SAXS data open the way for structural modeling of these complexes to obtain a reasonable explanation for the correlated decrease in amplitude of an abnormal negative band in the circular dichroism (CD) spectra and the characteristic Bragg peak in the experimental small-angle X-ray scattering curves observed on treatment of CLCD by gadolinium salts. Model simulations of different kinds of structural organizations of the DNA-gadolinium complex were performed using novel SAXS data analysis methods in combination with several new, complementary modeling techniques, enabling us to build low-resolution three-dimensional structural models of DNA-gadolinium complexes fixed in CLCD particles. The obtained models allow us to suggest that a change takes place in the helical twist of quasinematic layers formed by these molecules at high concentrations of gadolinium salt. This change in the twist can be used to explain the experimentally observed increase in amplitude of an abnormal band in the CD spectra of DNA CLCD.
Shtykova
E V
EV
Institute of Crystallography of the Russian Academy of Sciences, Moscow, Russia. shtykova@ns.crys.ras.ru
Volkov
V V
VV
Salyanov
V I
VI
Yevdokimov
Yu M
YM
D002942:Circular Dichroism; D004247:DNA / Q000737:chemistry* / Q000378:metabolism*; D004305:Dose-Response Relationship, Drug; D005682:Gadolinium / Q000737:chemistry / Q000378:metabolism* / Q000494:pharmacology; D008024:Ligands; D050866:Liquid Crystals / Q000737:chemistry*; D008958:Models, Molecular; D009690:Nucleic Acid Conformation / Q000187:drug effects; D012492:Salts / Q000737:chemistry; D053838:Scattering, Small Angle; D014961:X-Ray Diffraction
D008024:Ligands; D012492:Salts; D004247:DNA; D005682:Gadolinium