Conserved developmental transcriptomes in evolutionarily divergent species.
BACKGROUND
Evolutionarily divergent organisms often share developmental anatomies despite vast differences between their genome sequences. The social amoebae Dictyostelium discoideum and Dictyostelium purpureum have similar developmental morphologies although their genomes are as divergent as those of man and jawed fish.


RESULTS
Here we show that the anatomical similarities are accompanied by extensive transcriptome conservation. Using RNA sequencing we compared the abundance and developmental regulation of all the transcripts in the two species. In both species, most genes are developmentally regulated and the greatest expression changes occur during the transition from unicellularity to multicellularity. The developmental regulation of transcription is highly conserved between orthologs in the two species. In addition to timing of expression, the level of mRNA production is also conserved between orthologs and is consistent with the intuitive notion that transcript abundance correlates with the amount of protein required. Furthermore, the conservation of transcriptomes extends to cell-type specific expression.


CONCLUSIONS
These findings suggest that developmental programs are remarkably conserved at the transcriptome level, considering the great evolutionary distance between the genomes. Moreover, this transcriptional conservation may be responsible for the similar developmental anatomies of Dictyostelium discoideum and Dictyostelium purpureum.
Parikh
Anup
A
Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA. anup.parikh@gmail.com
Miranda
Edward Roshan
ER
Katoh-Kurasawa
Mariko
M
Fuller
Danny
D
Rot
Gregor
G
Zagar
Lan
L
Curk
Tomaz
T
Sucgang
Richard
R
Chen
Rui
R
Zupan
Blaz
B
Loomis
William F
WF
Kuspa
Adam
A
Shaulsky
Gad
G
D001483:Base Sequence; D005075:Biological Evolution; D017124:Conserved Sequence / Q000235:genetics*; D018076:DNA, Complementary / Q000235:genetics; D004023:Dictyostelium / Q000166:cytology / Q000235:genetics*; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental / Q000235:genetics*; D053263:Gene Regulatory Networks / Q000235:genetics*; D008969:Molecular Sequence Data; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism*; D017423:Sequence Analysis, RNA; D013045:Species Specificity
D018076:DNA, Complementary; D012333:RNA, Messenger