Peptide-TiO(2) interaction in aqueous solution: conformational dynamics of RGD using different water models.
Adsorption behavior and dynamics of Arg-Gly-Asp (RGD) tripeptides with different orientations onto the rutile TiO(2) (110) surface in water solution were systematically investigated by molecular dynamics (MD) simulations, using two different water models, TIP3P (transferable intermolecular potential 3P) and SPC/E (extended simple point charge). Possible RGD-TiO(2) binding modes in the form of hydrogen-bonding interactions, involving the amide groups (NH(3)(+) or NH(2)(+), NH(2)) and surface oxygen atoms were identified. The behavior of RGD in contact with the TiO(2) layer was elucidated in detail by the analysis of atom-atom distances, backbone dihedral angles and hydration layers distributed over the interface. The simulation results suggest that, the attachment modes of tripeptides with the same starting arrangement are similar when solvated in TIP3P and SPC/E water, but the conformational stability of the amino sequence is somewhat sensitive to the adopted solvent model. Moreover, the intensity of peptide-surface interaction varies widely depending on the initial arrangement of the RGD sequence.
Wu
Chunya
C
Center for Precision Engineering, Harbin Institute of Technology, P.O. Box 413, Harbin 150001, China. wuchunya1982@163.com
Chen
Mingjun
M
Guo
Chuangqiang
C
Zhao
Xin
X
Yuan
Changsong
C
D000595:Amino Acid Sequence; D006860:Hydrogen Bonding; D056004:Molecular Dynamics Simulation; D009842:Oligopeptides / Q000737:chemistry*; D010455:Peptides / Q000737:chemistry*; D011485:Protein Binding; D014025:Titanium / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
D009842:Oligopeptides; D010455:Peptides; D014867:Water; C009495:titanium dioxide; C047981:arginyl-glycyl-aspartic acid; D014025:Titanium