A method of tumor classification based on wavelet packet transforms and neighborhood rough set.
Tumor classification is an important application domain of gene expression data. Because of its characteristics of high dimensionality and small sample size (SSS), and a great number of redundant genes not related to tumor phenotypes, various feature extraction or gene selection methods have been applied to gene expression data analysis. Wavelet packet transforms (WPT) and neighborhood rough sets (NRS) are effective tools to extract and select features. In this paper, a novel approach of tumor classification is proposed based on WPT and NRS. First the classification features are extracted by WPT and the decision tables are formed, then the attributes of the decision tables are reduced by NRS. Thirdly, a feature subset with few attributes and high classification ability is obtained. The experimental results on three gene expression datasets demonstrate that the proposed method is effective and feasible.
Zhang
Shan-Wen
SW
Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O. Box 1130, Hefei, Anhui 230031, China.
Huang
De-Shuang
DS
Wang
Shu-Lin
SL
D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D006801:Humans; D008954:Models, Biological; D009369:Neoplasms / Q000235:genetics*