KMeyeDB: a graphical database of mutations in genes that cause eye diseases.
KMeyeDB (http://mutview.dmb.med.keio.ac.jp/) is a database of human gene mutations that cause eye diseases. We have substantially enriched the amount of data in the database, which now contains information about the mutations of 167 human genes causing eye-related diseases including retinitis pigmentosa, cone-rod dystrophy, night blindness, Oguchi disease, Stargardt disease, macular degeneration, Leber congenital amaurosis, corneal dystrophy, cataract, glaucoma, retinoblastoma, Bardet-Biedl syndrome, and Usher syndrome. KMeyeDB is operated using the database software MutationView, which deals with various characters of mutations, gene structure, protein functional domains, and polymerase chain reaction (PCR) primers, as well as clinical data for each case. Users can access the database using an ordinary Internet browser with smooth user-interface, without user registration. The results are displayed on the graphical windows together with statistical calculations. All mutations and associated data have been collected from published articles. Careful data analysis with KMeyeDB revealed many interesting features regarding the mutations in 167 genes that cause 326 different types of eye diseases. Some genes are involved in multiple types of eye diseases, whereas several eye diseases are caused by different mutations in one gene.
Kawamura
Takashi
T
Department of Molecular Biology, Keio University School of Medicine, Shinjuku-ku, Tokyo, Japan.
Ohtsubo
Masafumi
M
Mitsuyama
Susumu
S
Ohno-Nakamura
Saho
S
Shimizu
Nobuyoshi
N
Minoshima
Shinsei
S
D030541:Databases, Genetic; D005128:Eye Diseases / Q000145:classification / Q000235:genetics* / Q000473:pathology; D020022:Genetic Predisposition to Disease / Q000235:genetics*; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D009154:Mutation; D012984:Software