An introduction to effective use of enrichment analysis software.
In recent years, there has been an explosion in the range of software available for annotation enrichment analysis. Three classes of enrichment algorithms and their associated software implementations are introduced here. Their limitations and caveats are discussed, and direction for tool selection is given.
Tipney
Hannah
H
Center for Computational Pharmacology, University of Colorado Denver, Aurora, CO 80045, USA.
Hunter
Lawrence
L
D000465:Algorithms; D019295:Computational Biology / Q000639:trends; D005796:Genes; D020407:Internet; D012984:Software