Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets.
Most cellular processes are enabled by cohorts of interacting proteins that form dynamic networks within the plant proteome. The study of these networks can provide insight into protein function and provide new avenues for research. This article informs the plant science community of the currently available sources of protein interaction data and discusses how they can be useful to researchers. Using our recently curated IntAct Arabidopsis thaliana protein-protein interaction data set as an example, we discuss potentials and limitations of the plant interactomes generated to date. In addition, we present our efforts to add value to the interaction data by using them to seed a proteome-wide map of predicted protein subcellular locations.
Lee
KiYoung
K
Department of Biomedical Informatics, Ajou University School of Medicine, Suwon 443-749, Korea. kiylee@ajou.ac.kr
Thorneycroft
David
D
Achuthan
Premanand
P
Hermjakob
Henning
H
Ideker
Trey
T
D017360:Arabidopsis / Q000378:metabolism; D029681:Arabidopsis Proteins / Q000378:metabolism*; D019295:Computational Biology; D030562:Databases, Protein; D025941:Protein Interaction Mapping; D020543:Proteome / Q000378:metabolism
D029681:Arabidopsis Proteins; D020543:Proteome