Molecular characterization of five porcine candidate genes for drip loss in pork.
Drip loss is the loss of fluid from a piece of meat without mechanical force and represents an important meat quality trait. Previous work revealed a quantitative trait locus (QTL) for drip loss in pork in an experimental Duroc x Pietrain (DUPI) F2 family on SSC 5. Based on functional data indicating their possible involvement in water holding capacity and their expression in skeletal muscle, we selected five positional candidates (ACO2, ADSL, CBY1, KCNJ4, PLA2AG6) out of 130 predicted genes in the QTL interval for further analysis. We performed a mutation analysis of all coding exons and discovered 204 polymorphisms. We genotyped 39 single nucleotide polymorphisms (SNPs) in 192 Pietrain pigs with extreme drip loss phenotypes and detected a possible association with drip loss for one non-coding SNP in the ADSL gene (ss107793818, p(raw) = 0.021). Correspondingly, ADSL diplotypes were associated with drip loss and pH1 of M. longissimus dorsi. However, after correction for multiple testing, none of the tested SNPs were significantly associated with drip loss. One possible explanation for these results is that one of the QTL-alleles from the experimental DUPI family may be fixed or nearly fixed in the tested Pietrain population.
Karol
Agnieszka
A
Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Drögemuller
Cord
C
Wimmers
Klaus
K
Schellander
Karl
K
Leeb
Tosso
T
D000818:Animals; D004247:DNA / Q000032:analysis; D005260:Female; D005786:Gene Expression Regulation / Q000502:physiology*; D005819:Genetic Markers / Q000235:genetics*; D005838:Genotype; D008297:Male; D008460:Meat / Q000592:standards; D040641:Quantitative Trait Loci; D013552:Swine / Q000235:genetics*; D014867:Water / Q000502:physiology*
D005819:Genetic Markers; D014867:Water; D004247:DNA