title: A statistical pixel intensity model for segmentation of confocal laser scanning microscopy images.
abstract: Confocal laser scanning microscopy (CLSM) has been widely used in the life sciences for the characterization of cell processes because it allows the recording of the distribution of fluorescence-tagged macromolecules on a section of the living cell. It is in fact the cornerstone of many molecular transport and interaction quantification techniques where the identification of regions of interest through image segmentation is usually a required step. In many situations, because of the complexity of the recorded cellular structures or because of the amounts of data involved, image segmentation either is too difficult or inefficient to be done by hand and automated segmentation procedures have to be considered. Given the nature of CLSM images, statistical segmentation methodologies appear as natural candidates. In this work we propose a model to be used for statistical unsupervised CLSM image segmentation. The model is derived from the CLSM image formation mechanics and its performance is compared to the existing alternatives. Results show that it provides a much better description of the data on classes characterized by their mean intensity, making it suitable not only for segmentation methodologies with known number of classes but also for use with schemes aiming at the estimation of the number of classes through the application of cluster selection criteria.
authors.affiliation: Instituto de Sistemas e Robótica, Technical University of Lisbon, Lisboa, Portugal. acalapez@laseeb.org
authors.forename: Alexandre
authors.initials: A
authors.lastname: Calapez
authors.forename: Agostinho
authors.initials: A
authors.lastname: Rosa
mesh_terms: D000465:Algorithms; D022082:Cellular Structures / Q000648:ultrastructure; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D018613:Microscopy, Confocal / Q000379:methods*; D016012:Poisson Distribution; D015003:Yeasts / Q000166:cytology