title: Theory of a reconstructive structural transformation in capsids of icosahedral viruses.
abstract: A theory of a reconstructive structural transformation in icosahedral capsid shells is developed for a whole family of virulent human viruses. It is shown that the reversible rearrangement of proteins during the virus maturation transformation is driven by the variation in the wave number l associated with the protein density distribution function. The collective displacement field of protein centers from their positions in the initial (procapsid) and the final (capsid) two-dimensional icosahderal structures is derived. The amplitude of the displacement field is shown to be small and it minimizes the calculated free energy of the transformation. The theory allows us to propose a continuous thermodynamical mechanism of the reconstructive procapsid-to-capsid transformation. In the frame of the density-wave approach, we also propose to take an equivalent plane-wave vector as a common structural feature for different icosahedral capsid shells formed by the same proteins. Using these characteristics, we explain the relation between the radii of the procapsid and capsid shells and generalize it to the case of the viral capsid polymorphism.
authors.affiliation: Physical Faculty, South Federal University, 5 Zorge Str., 344090 Rostov-on-Don, Russia.
authors.forename: S B
authors.initials: SB
authors.lastname: Rochal
authors.forename: V L
authors.initials: VL
authors.lastname: Lorman
mesh_terms: D002213:Capsid / Q000737:chemistry* / Q000648:ultrastructure*; D003198:Computer Simulation; D006801:Humans; D008953:Models, Anatomic; D008954:Models, Biological; D008956:Models, Chemical; D013329:Structure-Activity Relationship