title: NMR structural and dynamical investigation of the isolated voltage-sensing domain of the potassium channel KvAP: implications for voltage gating.
abstract: The structure and dynamics of the isolated voltage-sensing domain (VSD) of the archaeal potassium channel KvAP was studied by high-resolution NMR. The almost complete backbone resonance assignment and partial side-chain assignment of the (2)H,(13)C,(15)N-labeled VSD were obtained for the protein domain solubilized in DPC/LDAO (2:1) mixed micelles. Secondary and tertiary structures of the VSD were characterized using secondary chemical shifts and NOE contacts. These data indicate that the spatial structure of the VSD solubilized in micelles corresponds to the structure of the domain in an open state of the channel. NOE contacts and secondary chemical shifts of amide protons indicate the presence of tightly bound water molecule as well as hydrogen bond formation involving an interhelical salt bridge (Asp62-R133) that stabilizes the overall structure of the domain. The backbone dynamics of the VSD was studied using (15)N relaxation measurements. The loop regions S1-S2 and S2-S3 were found mobile, while the S3-S4 loop (voltage-sensor paddle) was found stable at the ps-ns time scale. The moieties of S1, S2, S3, and S4 helices sharing interhelical contacts (at the level of the Asp62-R133 salt bridge) were observed in conformational exchange on the micros-ms time scale. Similar exchange-induced broadening of characteristic resonances was observed for the VSD solubilized in the membrane of lipid-protein nanodiscs composed of DMPC, DMPG, and POPC/DOPG lipids. Apparently, the observed interhelical motions represent an inherent property of the VSD of the KvAP channel and can play an important role in the voltage gating.
authors.affiliation: Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., 117997 Moscow, Russia. zh@nmr.ru
authors.forename: Zakhar O
authors.initials: ZO
authors.lastname: Shenkarev
authors.forename: Alexander S
authors.initials: AS
authors.lastname: Paramonov
authors.forename: Ekaterina N
authors.initials: EN
authors.lastname: Lyukmanova
authors.forename: Lyudmila N
authors.initials: LN
authors.lastname: Shingarova
authors.forename: Sergei A
authors.initials: SA
authors.lastname: Yakimov
authors.forename: Maxim A
authors.initials: MA
authors.lastname: Dubinnyi
authors.forename: Vladimir V
authors.initials: VV
authors.lastname: Chupin
authors.forename: Mikhail P
authors.initials: MP
authors.lastname: Kirpichnikov
authors.forename: Marcel J J
authors.initials: MJ
authors.lastname: Blommers
authors.forename: Alexander S
authors.initials: AS
authors.lastname: Arseniev
mesh_terms: D041522:Aeropyrum; D000595:Amino Acid Sequence; D019843:Archaeal Proteins / Q000737:chemistry / Q000378:metabolism; D002462:Cell Membrane / Q000737:chemistry / Q000378:metabolism; D018360:Crystallography, X-Ray; D004553:Electric Conductivity; D004578:Electron Spin Resonance Spectroscopy; D015640:Ion Channel Gating; D008823:Micelles; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D019906:Nuclear Magnetic Resonance, Biomolecular; D015221:Potassium Channels / Q000737:chemistry* / Q000378:metabolism*; D017434:Protein Structure, Tertiary; D012995:Solubility
chemical_list: D019843:Archaeal Proteins; D008823:Micelles; D015221:Potassium Channels