Arabidopsis tiling array analysis to identify the stress-responsive genes.
Plants respond and adapt to drought, cold, and high-salinity stresses. Stress-inducible gene products function in the stress response and tolerance in plants. Using cDNA microarrays and oligonucleotide microarrays, stress-inducible genes have been identified in various plant species so far. Recently, tiling array technology has become a powerful tool for the whole-genome transcriptome analysis. We applied the Arabidopsis Affymetrix tiling arrays to study the whole-genome transcriptome under drought, cold, and high-salinity stresses and identified a large number of drought, cold, and high-salinity stress-inducible genes and transcriptional units (TUs).
Matsui
Akihiro
A
Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, Yokohama, Japan.
Ishida
Junko
J
Morosawa
Taeko
T
Okamoto
Masanori
M
Kim
Jong-Myong
JM
Kurihara
Yukio
Y
Kawashima
Makiko
M
Tanaka
Maho
M
To
Taiko Kim
TK
Nakaminami
Kentaro
K
Kaminuma
Eli
E
Endo
Takaho A
TA
Mochizuki
Yoshiki
Y
Kawaguchi
Shuji
S
Kobayashi
Norio
N
Shinozaki
Kazuo
K
Toyoda
Tetsuro
T
Seki
Motoaki
M
D017360:Arabidopsis / Q000235:genetics*; D001710:Biotin / Q000378:metabolism; D019295:Computational Biology; D018076:DNA, Complementary / Q000096:biosynthesis; D055864:Droughts; D018506:Gene Expression Regulation, Plant; D017343:Genes, Plant / Q000235:genetics*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D018075:RNA, Complementary / Q000235:genetics; D018749:RNA, Plant / Q000235:genetics / Q000302:isolation & purification; D013194:Staining and Labeling; D013312:Stress, Physiological / Q000235:genetics*; D014158:Transcription, Genetic
D018076:DNA, Complementary; D018075:RNA, Complementary; D018749:RNA, Plant; D001710:Biotin