title: Quantitative evaluation of LDDMM, FreeSurfer, and CARET for cortical surface mapping.
abstract: Cortical surface mapping has been widely used to compensate for individual variability of cortical shape and topology in anatomical and functional studies. While many surface mapping methods were proposed based on landmarks, curves, spherical or native cortical coordinates, few studies have extensively and quantitatively evaluated surface mapping methods across different methodologies. In this study we compared five cortical surface mapping algorithms, including large deformation diffeomorphic metric mapping (LDDMM) for curves (LDDMM-curve), for surfaces (LDDMM-surface), multi-manifold LDDMM (MM-LDDMM), FreeSurfer, and CARET, using 40 MRI scans and 10 simulated datasets. We computed curve variation errors and surface alignment consistency for assessing the mapping accuracy of local cortical features (e.g., gyral/sulcal curves and sulcal regions) and the curvature correlation for measuring the mapping accuracy in terms of overall cortical shape. In addition, the simulated datasets facilitated the investigation of mapping error distribution over the cortical surface when the MM-LDDMM, FreeSurfer, and CARET mapping algorithms were applied. Our results revealed that the LDDMM-curve, MM-LDDMM, and CARET approaches best aligned the local curve features with their own curves. The MM-LDDMM approach was also found to be the best in aligning the local regions and cortical folding patterns (e.g., curvature) as compared to the other mapping approaches. The simulation experiment showed that the MM-LDDMM mapping yielded less local and global deformation errors than the CARET and FreeSurfer mappings.
authors.affiliation: NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore, Singapore.
authors.forename: Jidan
authors.initials: J
authors.lastname: Zhong
authors.forename: Desiree Yee Ling
authors.initials: DY
authors.lastname: Phua
authors.forename: Anqi
authors.initials: A
authors.lastname: Qiu
mesh_terms: D000368:Aged; D000465:Algorithms; D002540:Cerebral Cortex / Q000033:anatomy & histology*; D003198:Computer Simulation; D019992:Databases as Topic; D005260:Female; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods; D008279:Magnetic Resonance Imaging / Q000379:methods*; D008297:Male; D008875:Middle Aged; D015203:Reproducibility of Results; D012984:Software; D055815:Young Adult