Microarray analyses of shrimp immune responses.
Shrimp aquaculture is one of the major foodproducing industries in the world. However, it is being impacted by several problems including diseases, antibiotic use, and environmental factors. The extent of the effects of these problems in the immune system of the shrimp at the molecular level is just beginning to be understood. Here, we review the gene expression profile of shrimp in response to some of these problems using the high-throughput microarray analysis, including white spot syndrome virus, yellow head virus, Vibrio spp., peptidoglycan, oxytetracycline, oxolinic acid, salinity, and temperature.
Aoki
Takashi
T
Laboratory of Genome Science, Tokyo University of Marine Science and Technology, Konan 4-5-7 Minato, Tokyo 108-8477, Japan. aoki@kaiyodai.ac.jp
Wang
Han-Ching
HC
Unajak
Sasimanas
S
Santos
Mudjekeewis D
MD
Kondo
Hidehiro
H
Hirono
Ikuo
I
D000818:Animals; D017756:Aquaculture; D020869:Gene Expression Profiling / Q000662:veterinary*; D005786:Gene Expression Regulation / Q000276:immunology*; D007113:Immunity, Innate / Q000235:genetics*; D046228:Microarray Analysis / Q000662:veterinary*; D010093:Oxolinic Acid / Q000276:immunology; D010118:Oxytetracycline / Q000276:immunology; D033561:Penaeidae / Q000235:genetics* / Q000276:immunology*; D010457:Peptidoglycan / Q000276:immunology; D046828:Roniviridae / Q000276:immunology; D054712:Salinity; D013696:Temperature; D014733:Vibrio / Q000276:immunology; D046848:White spot syndrome virus 1 / Q000276:immunology
D010457:Peptidoglycan; D010093:Oxolinic Acid; D010118:Oxytetracycline
Mol Ecol. 2007 Nov;16(22):4674-83
17922814
Fish Shellfish Immunol. 2002 Oct;13(4):293-309
12443012
Mar Biotechnol (NY). 2006 Sep-Oct;8(5):491-500
16794954
BMC Genomics. 2007 May 16;8:120
17506900
Fish Shellfish Immunol. 2003 Jul;15(1):71-90
12833917
Dis Aquat Organ. 2005 Jun 14;65(1):75-8
16042046
J Virol. 2006 Nov;80(21):10365-71
17041217
Mol Biol Evol. 2009 Jan;26(1):155-66
18927090
Fish Shellfish Immunol. 2008 Apr;24(4):426-35
18272398
J Virol. 2003 Sep;77(18):10162-7
12941929
J Agric Food Chem. 2008 Aug 13;56(15):6454-9
18611032
Dis Aquat Organ. 2007 Mar 29;75(1):79-83
17523546
Fish Shellfish Immunol. 2007 Jan-Feb;22(1-2):68-76
16702000
J Virol. 2007 Feb;81(3):1461-71
17079306
Fish Shellfish Immunol. 2006 May;20(5):671-81
16213751
BMB Rep. 2008 Sep 30;41(9):670-7
18823592
Comp Biochem Physiol C Toxicol Pharmacol. 2002 Dec;133(4):557-65
12458183
BMC Bioinformatics. 2006 Jun 19;7:309
16784526
Mar Biotechnol (NY). 2008 Nov-Dec;10(6):731-40
18563487
Dev Comp Immunol. 2005;29(2):103-12
15450750
J Vet Pharmacol Ther. 2007 Oct;30(5):451-5
17803738
Dev Biol Stand. 1997;90:413-21
9270870
J Biol Chem. 2007 Nov 16;282(46):33593-33598
17855335
Fish Shellfish Immunol. 2004 Oct;17(4):325-33
15312659
Mol Immunol. 2008 Jul;45(12):3438-45
18486974
Mar Biotechnol (NY). 2008 Jul-Aug;10(4):416-28
18246396
Dis Aquat Organ. 2003 Mar 17;54(1):73-8
12718474
Fish Shellfish Immunol. 2009 Feb;26(2):339-44
19111620
Anim Genet. 2007 Aug;38(4):319-31
17596124
Physiol Genomics. 2005 Apr 14;21(2):174-83
15728333
Fish Shellfish Immunol. 2009 Apr;26(4):646-50
19071220
Dev Comp Immunol. 2008;32(3):198-203
17765304
Dev Comp Immunol. 2008;32(12):1497-509
18602420
J Biochem Mol Biol. 2006 Jan 31;39(1):26-36
16466635
Comp Biochem Physiol C Toxicol Pharmacol. 2007 Apr;145(3):315-20
17287147
Dev Comp Immunol. 2005;29(8):681-91
15854680
Proteomics. 2007 Oct;7(20):3809-14
17880002
Physiol Genomics. 2008 Feb 19;32(3):380-92
18073272
Antiviral Res. 2004 Feb;61(2):93-9
14670582
Fish Shellfish Immunol. 2005 Jan;18(1):39-48
15450967
Fish Shellfish Immunol. 2002 Jul;13(1):69-83
12201653
J Biochem Mol Biol. 2007 Jul 31;40(4):501-10
17669265
Mol Immunol. 2007 Feb;44(6):1065-74
16982096
Arch Virol. 2003 Dec;148(12):2381-96
14648293
Dev Comp Immunol. 2008;32(7):808-13
18234332
Dis Aquat Organ. 1999 Dec 22;39(1):1-11
11407399
Sci Total Environ. 2008 Aug 1;400(1-3):142-61
18817948
Environ Microbiol. 2008 Oct;10(10):2718-27
18616551
Fish Shellfish Immunol. 2007 Jun;22(6):598-607
17049272
J Bacteriol. 1968 May;95(5):1622-6
5650072
Physiol Genomics. 2007 Mar 14;29(1):44-56
17148689
Fish Shellfish Immunol. 2004 May;16(5):599-611
15110334
Mol Immunol. 2008 Jan;45(2):553-66
17599411
Dis Aquat Organ. 2000 Mar 14;40(2):85-92
10782341
Mol Immunol. 2008 Mar;45(5):1269-75
17977599
Arch Virol. 2006 Sep;151(9):1723-33
16583155
J Biotechnol. 2007 Jan 20;127(4):605-14
16987562
Fish Shellfish Immunol. 2008 Nov;25(5):485-93
18692576
J Cell Sci. 2000 Feb;113 ( Pt 3):461-9
10639333
Biochim Biophys Acta. 2008 Mar;1784(3):504-11
18206130
Sci Total Environ. 2001 Dec 3;280(1-3):93-131
11763276
Fish Shellfish Immunol. 2007 Aug;23(2):272-9
17442588
Dis Aquat Organ. 2002 Jul 8;50(2):87-93
12180709
BMC Genomics. 2008 Jun 24;9:299
18577222
Fish Shellfish Immunol. 2008 Dec;25(6):775-81
18974012
J Virol. 2004 Oct;78(20):11360-70
15452257
J Invertebr Pathol. 2006 Mar;91(3):188-94
16490202
Mol Immunol. 2008 Apr;45(7):1916-25
18078996
Gene. 2006 Dec 15;384:104-12
16945489
Fish Shellfish Immunol. 2008 Feb;24(2):260-6
18083599
Dev Comp Immunol. 2008;32(10):1142-50
18460415
Physiol Genomics. 2007 Sep 19;31(1):126-38
17566080
Fish Shellfish Immunol. 2007 May;22(5):520-34
17158065
Dev Comp Immunol. 2009 Feb;33(2):247-56
18834900
Virus Res. 2006 Jan;115(1):69-75
16139913
Dis Model Mech. 2008 Sep-Oct;1(2-3):144-54; discussion 153
19048077
Virus Res. 2008 Sep;136(1-2):65-74
18534703
Fish Shellfish Immunol. 2000 Aug;10(6):555-8
11016589
Virology. 2005 Apr 10;334(2):327-41
15780883
J Gen Virol. 2005 Jul;86(Pt 7):2081-2100
15958687
J Biol Chem. 1997 Nov 7;272(45):28398-406
9353298
J Exp Biol. 2008 Oct;211(Pt 19):3077-84
18805806
Dis Aquat Organ. 2006 Jan 30;68(2):175-80
16532608
Dis Aquat Organ. 2007 Mar 13;74(3):179-89
17465303
Fish Shellfish Immunol. 2009 Feb;26(2):201-9
19010422
Dev Comp Immunol. 2005;29(10):841-51
15978281
Dev Comp Immunol. 2008;32(7):758-72
18222540
Dev Comp Immunol. 1999 Oct-Dec;23(7-8):545-52
10579383
Mar Biotechnol (NY). 2008 Nov-Dec;10(6):664-75
18551345
Antiviral Res. 2005 Apr;66(1):39-45
15781131
Gen Comp Endocrinol. 2008 Aug;158(1):138-44
18602103
Curr Top Microbiol Immunol. 2007;316:295-313
17969453