From protein interaction profile to functional assignment: the human protein Ki-1/57 is associated with pre-mRNA splicing events.
The mapping of protein-protein interactions of a determined organism is considered fundamental to assign protein function in the post-genomic era. As part of this effort, screenings for pairwise interactions by yeast two-hybrid system have been used popularly to reveal protein interaction networks in different biological systems. Through the identification of protein interaction partners we have successfully obtained interesting functional clues for Ki-1/57, a human protein with no previous functional annotation, in the context of RNA metabolism. We briefly discuss the way we approached protein-protein interaction data to conduct and interpret further molecular biological and cellular studies as well as structural analyses on this protein. Our data suggest that Ki-1/57 belongs to the family of intrinsically unstructured proteins and that the structural flexibility may be crucial for its capacity to interact with many different proteins. A large fraction of these proteins are involved in pre-mRNA splicing control. Finally, Ki-1/57 is localized to several subnuclear domains, all of which have been described to splicing and other RNA processing events.
Bressan
Gustavo Costa
GC
Centro Nacional de Pesquisa em Energia e Materiais, Campinas, São Paulo, Brasil.
Kobarg
Jörg
J
D000818:Animals; D019295:Computational Biology / Q000379:methods; D053263:Gene Regulatory Networks; D006801:Humans; D055442:Metabolome / Q000502:physiology; D008954:Models, Biological; D018006:Myogenic Regulatory Factors / Q000235:genetics / Q000378:metabolism / Q000502:physiology*; D011485:Protein Binding / Q000502:physiology; D025941:Protein Interaction Mapping / Q000379:methods; D011506:Proteins / Q000378:metabolism* / Q000502:physiology*; D012322:RNA Precursors / Q000378:metabolism*; D012326:RNA Splicing / Q000235:genetics / Q000502:physiology*; D013329:Structure-Activity Relationship
C500946:HABP4 protein, human; D018006:Myogenic Regulatory Factors; D011506:Proteins; D012322:RNA Precursors