title: Detection, amplification & sequence homology of sodC in clinical isolates of Salmonella sp.
abstract: OBJECTIVE
  Periplasmic copper and zinc superoxide dismutase (Cu,Zn-SOD or SodC) is an important component of the antioxidant shield which protects bacteria from the phagocytic oxidative burst. Cu,Zn-SODs protect Gram-negative bacteria against oxygen damage which have also been shown to contribute to the pathogenicity of these bacterial species. We report the presence of SodC in drug resistant Salmonella sp. isolated from patients suffering from enteric fever. Further sodC was amplified, cloned into Escherichia coli and the nucleotide sequence and amino acid sequence homology were compared with the standard strain salmonella Typhimurium 14028.
  
  
  METHODS
  Salmonella enterica serovar Typhi (S. Typhi) and Salmonella enterica serovar Paratyphi (S. Paratyphi) were isolated and identified from blood samples of the patients. The isolates were screened for the presence of Cu, Zn-SOD by PAGE using KCN as inhibitor of Cu,Zn-SOD. The gene (sodC) was amplified by PCR, cloned and sequenced. The nucleotide and amino acid sequences of sodC were compared using CLUSTAL X.
  
  
  RESULTS
  SodC was detected in 35 per cent of the Salmonella isolates. Amplification of the genomic DNA of S. Typhi and S. Paratyphi with sodC specific primers resulted in 519 and 515 bp amplicons respectively. Single mutational difference at position 489 was observed between the sodC of S. Typhi and S. Paratyphi while they differed at 6 positions with the sodC of S. Typhimurium 14028. The SodC amino acid sequences of the two isolates were homologous but 3 amino acid difference was observed with that of standard strain S. Typhimurium 14028.
  
  
  CONCLUSIONS
  The presence of SodC in pathogenic bacteria could be a novel candidate as phylogenetic marker.
authors.affiliation: Department of Microbiology, Gulbarga University, Gulbarga , India.
authors.forename: M K
authors.initials: MK
authors.lastname: Sanjay
authors.forename: S M
authors.initials: SM
authors.lastname: Shrideshikan
authors.forename: M S
authors.initials: MS
authors.lastname: Usha
authors.forename: A
authors.initials: A
authors.lastname: Philipraj
authors.forename: S M
authors.initials: SM
authors.lastname: Gaddad
authors.forename: C T
authors.initials: CT
authors.lastname: Shivannavar
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism*; D001483:Base Sequence; D003001:Cloning, Molecular; D017931:DNA Primers; D004591:Electrophoresis, Polyacrylamide Gel; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D012475:Salmonella / Q000235:genetics / Q000378:metabolism*; D012689:Sequence Homology, Nucleic Acid
chemical_list: D001426:Bacterial Proteins; D017931:DNA Primers