Complete mitochondrial genome sequence of the Arctic gammarid, Onisimus nanseni (Crustacea; Amphipoda): Novel gene structures and unusual control region features.
To analyze the mitogenome of the amphipod Onisimus nanseni, we amplified the complete mitogenome of O. nanseni using long-PCR and genome walking techniques. The mitogenome of O. nanseni is circular and contains all the typical mt genes (2 rRNAs, 22 tRNAs, and 13 protein-coding genes). It has two peculiar non-coding regions of 148bp and 194bp. The latter can be involved in replication and termination processes. The total length of the pooled protein-coding, rRNA, and tRNA genes is shorter than those of other crustaceans. In addition, the intergenic spacers of the O. nanseni mitogenome are considerably shorter in length than those of other crustaceans. Fourteen adjacent genes overlap, resulting in a compact mitogenomic structure. In the O. nanseni mitogenome, the AT composition is elevated, particularly in the control regions (78.9% AT), as has been demonstrated for two other amphipods. The tRNA order is highly rearranged compared to other arthropod mitogenomes, but the order of protein-coding genes and rRNAs is largely conserved. The gene cluster between the CO1 and CO3 genes is completely conserved among all amphipods compared. This provides insights into the evolution and gene structures of crustacean mitochondrial genomes, particularly in amphipods.
Ki
Jang-Seu
JS
Department of Chemistry, Hanyang University, Seoul, South Korea.
Hop
Haakon
H
Kim
Se-Joo
SJ
Kim
Il-Chan
IC
Park
Heum Gi
HG
Lee
Jae-Seong
JS
D033304:Amphipoda / Q000235:genetics*; D000818:Animals; D001483:Base Sequence; D003062:Codon / Q000235:genetics; D020459:Genes, rRNA; D054629:Genome, Mitochondrial; D011506:Proteins / Q000235:genetics; D012343:RNA, Transfer / Q000235:genetics
D003062:Codon; D011506:Proteins; D012343:RNA, Transfer