title: Multiplexed identification of different fish species by detection of parvalbumin, a common fish allergen gene: a DNA application of multi-analyte profiling (xMAP) technology.
abstract: Fish are a common cause of allergic reactions associated with food consumption, with parvalbumin being the major allergenic protein. Some fish-hypersensitive patients tolerate some fish species while being allergic to others. Reliable detection methods for allergenic fish species in foods are necessary to ensure compliance with food allergen labeling guidelines to protect fish-allergic consumers. The objective of this project was to develop a multi-analyte detection method for the presence of fish in food. Therefore, conserved parvalbumin exon sequences were utilized for the design of universal PCR primers amplifying intron DNA and small regions of exons flanking the enclosed intron from even very distantly related fish species. An assay for the identification of eight fish species was developed using xMAP technology with probes targeting species-specific parvalbumin intron regions. Additionally, a universal fish probe was designed targeting a highly conserved exon region located between the intron and the reverse primer region. The universal fish assay showed no cross-reactivity with other species, such as beef, pork, lamb, chicken, turkey, and shrimp. Importantly, with the exception of one notable case with fish in the same subfamily, species-specific detection showed no cross-reactivity with other fish species. Limits of detection for these eight species were experimentally estimated to range from 0.01% to 0.04%, with potential to increase the detection sensitivity. This report introduces a newly developed method for the multiplex identification of at least eight allergenic fish species in food, which could conceivably be extended to detect up to 100 species simultaneously in one sample.
authors.affiliation: U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Office of Regulatory Science, Division of Bioanalytical Chemistry, 5100 Paint Branch Parkway, College Park, MD 20740, USA. s-hildebrandt@gmx.net
authors.forename: Sabine
authors.initials: S
authors.lastname: Hildebrandt
mesh_terms: D000485:Allergens / Q000032:analysis / Q000235:genetics* / Q000276:immunology; D000818:Animals; D017931:DNA Primers / Q000235:genetics; D005091:Exons; D029941:Fish Proteins / Q000032:analysis / Q000235:genetics* / Q000276:immunology; D005399:Fishes / Q000145:classification / Q000235:genetics* / Q000276:immunology; D005504:Food Analysis / Q000379:methods; D008969:Molecular Sequence Data; D010320:Parvalbumins / Q000032:analysis / Q000235:genetics* / Q000276:immunology; D016133:Polymerase Chain Reaction / Q000379:methods*; D013045:Species Specificity
chemical_list: D000485:Allergens; D017931:DNA Primers; D029941:Fish Proteins; D010320:Parvalbumins