title: Advancing RNA-Seq analysis.
authors.forename: Brian J
authors.initials: BJ
authors.lastname: Haas
authors.forename: Michael C
authors.initials: MC
authors.lastname: Zody
mesh_terms: D019295:Computational Biology; D020869:Gene Expression Profiling / Q000379:methods / Q000639:trends; D017423:Sequence Analysis, RNA / Q000379:methods / Q000639:trends; D012984:Software
references.citation: Genome Res. 2009 Dec;19(12):2324-33
references.pmid: 19767417
references.citation: Nat Biotechnol. 2010 May;28(5):511-5
references.pmid: 20436464
references.citation: Genome Biol. 2002;3(6):RESEARCH0029
references.pmid: 12093376
references.citation: Science. 2005 Sep 2;309(5740):1559-63
references.pmid: 16141072
references.citation: Nature. 2008 Nov 27;456(7221):470-6
references.pmid: 18978772
references.citation: Genome Biol. 2008;9(12):R175
references.pmid: 19087247
references.citation: Bioinformatics. 2009 Nov 1;25(21):2872-7
references.pmid: 19528083
references.citation: Nat Methods. 2008 Jul;5(7):621-8
references.pmid: 18516045
references.citation: Science. 1991 Jun 21;252(5013):1651-6
references.pmid: 2047873
references.citation: Nature. 2009 Mar 12;458(7235):223-7
references.pmid: 19182780
references.citation: Science. 2008 Jun 6;320(5881):1344-9
references.pmid: 18451266
references.citation: Nat Rev Genet. 2009 Jan;10(1):57-63
references.pmid: 19015660
references.citation: Bioinformatics. 2009 May 1;25(9):1105-11
references.pmid: 19289445
references.citation: Nat Biotechnol. 2010 May;28(5):503-10
references.pmid: 20436462
references.citation: Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3264-9
references.pmid: 19208812