title: Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces.
abstract: Feces and distal gut contents were collected from three coral reef fish species. Bacteria cell abundances, as determined via epifluorescence microscopy, ranged two orders of magnitude among the fishes. Mass-specific and apparent cell-specific hydrolytic enzyme activities in feces from Chlorurus sordidus were very high, suggesting that endogenous fish enzymes were egested into feces. Denaturing gradient gel electrophoresis profiles of 16S rRNA genes were more similar among multiple individuals of the surgeonfish Acanthurus nigricans than among individuals of the parrotfish C. sordidus or the snapper Lutjanus bohar. Analyses of feces-derived 16S rRNA gene clones revealed that at least five bacterial phyla were present in A. nigricans and that Vibrionaceae comprised 10% of the clones. Meanwhile, C. sordidus contained at least five phyla and L. bohar three, but Vibrionaceae comprised 71% and 76% of the clones, respectively. Many sequences clustered phylogenetically to cultured Vibrio spp. and Photobacterium spp. including Vibrio ponticus and Photobacterium damselae. Other Vibrionaceae-like sequences comprised a distinct phylogenetic group that may represent the presence of 'feces-specific' bacteria. The observed differences among fishes may reflect native gut microbiota and/or bacterial assemblages associated with ingested prey.
authors.affiliation: Marine Biology Research Division, Scripps Institution of Oceanography, University of California-San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA. ssmriga@ucsd.edu
authors.forename: Steven
authors.initials: S
authors.lastname: Smriga
authors.forename: Stuart A
authors.initials: SA
authors.lastname: Sandin
authors.forename: Farooq
authors.initials: F
authors.lastname: Azam
mesh_terms: D000818:Animals; D037421:Anthozoa; D001419:Bacteria / Q000145:classification / Q000235:genetics*; D044822:Biodiversity; D004269:DNA, Bacterial / Q000235:genetics; D005243:Feces / Q000382:microbiology*; D015723:Gene Library; D016013:Likelihood Functions; D010473:Perciformes / Q000382:microbiology*; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D014871:Water Microbiology
chemical_list: D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S