Modelling the influence of hydrogen bond network on chemical shielding tensors description. GIAO-DFT study of WALP23 transmembrane alpha-helix as a test case.
Density Functional Theory (B3LYP/6-31G(d,p)) calculations of (15)N amide and (13)C carbonyl NMR chemical shielding tensors have been performed on WALP23trans-membrane alpha-helix peptide and compared to solid state NMR experiment performed on [(13)C(1)-Ala(13), (15)N-Leu(14)] specifically labelled peptide powder sample. Using either theoretical results obtained on the whole peptide or experimental data as reference, several simplest chemical models have been explored in order to reduce the computational cost while maintaining good theoretical accuracy. From this study, it appears that the hydrogen bond (N-H...O=C) network that exists in the alpha-helix has a major influence on the chemical shielding tensor and more specifically on the carbonyl (13)C sigma(22) eigenvalue. We show that a small truncated WALP_7 model is not adequate for (13)C(1) NMR description. The application of an external electric field in order to model the hydrogen bond network allows calculating chemical shielding tensors with accurate eigenvalues while the associated eigenvectors are largely modified. Finally, a 23 residues polyglycine peptide that includes the Alanine and Leucine residues for which NMR parameters must be calculated is proposed as the chemical model. This model is sufficient to mostly reproduce the calculation performed on WALP23 with major gain in computational time. Moreover, the application of a low intensity external electric field allows reaching the experimental accuracy for the determination of the eigenvalues.
Rougier
Léa
L
Laboratoire de Physique et Chimie des Nano-Objets, Université de Toulouse, INSA-UPS, 135 av. de Rangueil, 31077 Toulouse, France.
Milon
Alain
A
Réat
Valérie
V
Jolibois
Franck
F
D000409:Alanine / Q000737:chemistry; D000595:Amino Acid Sequence; D002247:Carbon Isotopes / Q000737:chemistry; D006860:Hydrogen Bonding; D007930:Leucine / Q000737:chemistry; D009682:Magnetic Resonance Spectroscopy; D009587:Nitrogen Isotopes / Q000737:chemistry; D010455:Peptides / Q000737:chemistry*; D017433:Protein Structure, Secondary; D011789:Quantum Theory
D002247:Carbon Isotopes; D009587:Nitrogen Isotopes; D010455:Peptides; D007930:Leucine; D000409:Alanine