Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.
BACKGROUND
Several algorithms have been proposed for detecting fluorescently labeled subcellular objects in microscope images. Many of these algorithms have been designed for specific tasks and validated with limited image data. But despite the potential of using extensive comparisons between algorithms to provide useful information to guide method selection and thus more accurate results, relatively few studies have been performed.


RESULTS
To better understand algorithm performance under different conditions, we have carried out a comparative study including eleven spot detection or segmentation algorithms from various application fields. We used microscope images from well plate experiments with a human osteosarcoma cell line and frames from image stacks of yeast cells in different focal planes. These experimentally derived images permit a comparison of method performance in realistic situations where the number of objects varies within image set. We also used simulated microscope images in order to compare the methods and validate them against a ground truth reference result. Our study finds major differences in the performance of different algorithms, in terms of both object counts and segmentation accuracies.


CONCLUSIONS
These results suggest that the selection of detection algorithms for image based screens should be done carefully and take into account different conditions, such as the possibility of acquiring empty images or images with very few spots. Our inclusion of methods that have not been used before in this context broadens the set of available detection methods and compares them against the current state-of-the-art methods for subcellular particle detection.
Ruusuvuori
Pekka
P
Department of Signal Processing, Tampere University of Technology, Tampere, 33101, Finland. pekka.ruusuvuori@tut.fi
Aijö
Tarmo
T
Chowdhury
Sharif
S
Garmendia-Torres
Cecilia
C
Selinummi
Jyrki
J
Birbaumer
Mirko
M
Dudley
Aimée M
AM
Pelkmans
Lucas
L
Yli-Harja
Olli
O
D000465:Algorithms; D045744:Cell Line, Tumor; D002478:Cells, Cultured / Q000648:ultrastructure; D006801:Humans; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D008856:Microscopy, Fluorescence / Q000379:methods*; D012680:Sensitivity and Specificity
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