title: Arcadia: a visualization tool for metabolic pathways.
abstract: CONCLUSIONS
  Arcadia translates text-based descriptions of biological networks (SBML files) into standardized diagrams (SBGN PD maps). Users can view the same model from different perspectives and easily alter the layout to emulate traditional textbook representations.
  
  
  METHODS
  Arcadia is written in C++. The source code is available (along with Mac OS and Windows binaries) under the GPL from http://arcadiapathways.sourceforge.net/.
authors.affiliation: School of Chemistry and Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN, UK. alice.villeger@manchester.ac.uk
authors.forename: Alice C
authors.initials: AC
authors.lastname: Villéger
authors.forename: Stephen R
authors.initials: SR
authors.lastname: Pettifer
authors.forename: Douglas B
authors.initials: DB
authors.lastname: Kell
mesh_terms: D019295:Computational Biology / Q000379:methods*; D003196:Computer Graphics; D016208:Databases, Factual; D053858:Metabolic Networks and Pathways; D012984:Software; D014584:User-Computer Interface
references.citation: Methods Mol Biol. 2009;563:219-39
references.pmid: 19597788
references.citation: Bioinformatics. 2006 Dec 15;22(24):3067-74
references.pmid: 17032683
references.citation: Eur J Biochem. 2002 Aug;269(16):3894-904
references.pmid: 12180966
references.citation: BMC Neurosci. 2006 Oct 30;7 Suppl 1:S11
references.pmid: 17118155
references.citation: Bioinformatics. 2008 Mar 15;24(6):880-1
references.pmid: 18252737
references.citation: BMC Bioinformatics. 2006 Mar 06;7:109
references.pmid: 16519817
references.citation: Nat Biotechnol. 2009 Aug;27(8):735-41
references.pmid: 19668183
references.citation: Bioinformatics. 2006 Aug 1;22(15):1879-85
references.pmid: 16709586
references.citation: Bioinformatics. 2003 Mar 1;19(4):524-31
references.pmid: 12611808