title: A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae.
abstract: BACKGROUND
  The Galliformes is a well-known and widely distributed Order in Aves. The phylogenetic relationships of galliform birds, especially the turkeys, grouse, chickens, quails, and pheasants, have been studied intensively, likely because of their close association with humans. Despite extensive studies, convergent morphological evolution and rapid radiation have resulted in conflicting hypotheses of phylogenetic relationships. Many internal nodes have remained ambiguous.
  
  
  RESULTS
  We analyzed the complete mitochondrial (mt) genomes from 34 galliform species, including 14 new mt genomes and 20 published mt genomes, and obtained a single, robust tree. Most of the internal branches were relatively short and the terminal branches long suggesting an ancient, rapid radiation. The Megapodiidae formed the sister group to all other galliforms, followed in sequence by the Cracidae, Odontophoridae and Numididae. The remaining clade included the Phasianidae, Tetraonidae and Meleagrididae. The genus Arborophila was the sister group of the remaining taxa followed by Polyplectron. This was followed by two major clades: ((((Gallus, Bambusicola) Francolinus) (Coturnix, Alectoris)) Pavo) and (((((((Chrysolophus, Phasianus) Lophura) Syrmaticus) Perdix) Pucrasia) (Meleagris, Bonasa)) ((Lophophorus, Tetraophasis) Tragopan))).
  
  
  CONCLUSIONS
  The traditional hypothesis of monophyletic lineages of pheasants, partridges, peafowls and tragopans was not supported in this study. Mitogenomic analyses recovered robust phylogenetic relationships and suggested that the Galliformes formed a model group for the study of morphological and behavioral evolution.
authors.affiliation: Kunming Institute of Zoology, the Chinese Academy of Sciences, China.
authors.forename: Yong-Yi
authors.initials: YY
authors.lastname: Shen
authors.forename: Lu
authors.initials: L
authors.lastname: Liang
authors.forename: Yan-Bo
authors.initials: YB
authors.lastname: Sun
authors.forename: Bi-Song
authors.initials: BS
authors.lastname: Yue
authors.forename: Xiao-Jun
authors.initials: XJ
authors.lastname: Yang
authors.forename: Robert W
authors.initials: RW
authors.lastname: Murphy
authors.forename: Ya-Ping
authors.initials: YP
authors.lastname: Zhang
mesh_terms: D000818:Animals; D003370:Coturnix; D004272:DNA, Mitochondrial / Q000235:genetics; D046094:Galliformes / Q000145:classification / Q000235:genetics*; D054629:Genome, Mitochondrial; D010802:Phylogeny; D011784:Quail / Q000235:genetics; D014422:Turkeys / Q000235:genetics*
chemical_list: D004272:DNA, Mitochondrial
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