title: Effects of repeatability measures on results of fMRI sICA: a study on simulated and real resting-state effects.
abstract: Spatial independent components analysis (sICA) has become a widely applied data-driven method for fMRI data, especially for resting-state studies. These sICA approaches are often based on iterative estimation algorithms and there are concerns about accuracy due to noise. Repeatability measures such as ICASSO, RAICAR and ARABICA have been introduced as remedies but information on their effects on estimates is limited. The contribution of this study was to provide more of such information and test if the repeatability analyses are necessary. We compared FastICA-based ordinary and repeatability approaches concerning mixing vector estimates. Comparisons included original FastICA, FSL4 Melodic FastICA and original and modified ICASSO. The effects of bootstrapping and convergence threshold were evaluated. The results show that there is only moderate improvement due to repeatability measures and only in the bootstrapping case. Bootstrapping attenuated power from time courses of resting-state network related ICs at frequencies higher than 0.1 Hz and made subsets of low frequency oscillations more emphasized IC-wise. The convergence threshold did not have a significant role concerning the accuracy of estimates. The performance results suggest that repeatability measures or strict converge criteria might not be needed in sICA analyses of fMRI data. Consequently, the results in existing sICA fMRI literature are probably valid in this sense. A decreased accuracy of original bootstrapping ICASSO was observed and corrected by using centrotype mixing estimates but the results warrant for thorough evaluations of data-driven methods in general. Also, given the fMRI-specific considerations, further development of sICA methods is strongly encouraged.
authors.affiliation: Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland. jukka.remes@iki.fi
authors.forename: Jukka J
authors.initials: JJ
authors.lastname: Remes
authors.forename: Tuomo
authors.initials: T
authors.lastname: Starck
authors.forename: Juha
authors.initials: J
authors.lastname: Nikkinen
authors.forename: Esa
authors.initials: E
authors.lastname: Ollila
authors.forename: Christian F
authors.initials: CF
authors.lastname: Beckmann
authors.forename: Osmo
authors.initials: O
authors.lastname: Tervonen
authors.forename: Vesa
authors.initials: V
authors.lastname: Kiviniemi
authors.forename: Olli
authors.initials: O
authors.lastname: Silven
mesh_terms: D000328:Adult; D001921:Brain / Q000502:physiology; D001931:Brain Mapping / Q000379:methods*; D006801:Humans; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D008279:Magnetic Resonance Imaging; D008297:Male