title: Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR.
abstract: The O-antigen gene clusters of Escherichia coli serogroups O2 and O28ac were sequenced, and PCR assays were developed to identify strains belonging to these 2 serogroups. Sixteen and 8 open reading frames were mapped to these loci in E. coli O2:H4 U 9-41 and E. coli O28ac:H25 96-3286, respectively. The wzx (O-antigen flippase) and wzy (O-antigen polymerase) genes in the E. coli O2 and O28ac O-antigen gene clusters were selected as targets for PCR assays for their identification. PCR assays targeting the wzx and wzy genes were specific for these serogroups, with one exception. Escherichia coli serogroup O42 strains gave positive results with wzx and wzy PCR assays targeting E. coli O28ac, and antiserum raised against O42 cross-reacted with serogroup O28ac strains. The O-antigen gene cluster of a strain of E. coli serogroup O42 was sequenced, and there were only 3 nt differences between the O-antigen gene clusters of the O28ac and O42 strains. Multiplex PCR assays targeting the O2 wzx gene, the stx1, stx2, hly, eae, and saa genes, and the O28ac wzx, ial, ipaC, and ipaH genes were developed for detecting Shiga toxin-producing E. coli O2 strains and enteroinvasive E. coli O28ac strains, respectively. The O2 and O28ac wzx and wzy genes can be used as diagnostic markers in PCR assays for rapid identification of these serogroups as an alternative to serotyping, and the multiplex PCR assays targeting serogroup-specific genes in combination with virulence genes can be used to identify and to detect pathogenic serogroup O2 and O28ac strains.
authors.affiliation: Eastern Regional Research Center, Agriculture Research Service, US Department of Agriculture, Wyndmoor, PA 19038, USA. pina.fratamico@ars.usda.gov
authors.forename: Pina M
authors.initials: PM
authors.lastname: Fratamico
authors.forename: Xianghe
authors.initials: X
authors.lastname: Yan
authors.forename: Yanhong
authors.initials: Y
authors.lastname: Liu
authors.forename: Chitrita
authors.initials: C
authors.lastname: DebRoy
authors.forename: Brian
authors.initials: B
authors.lastname: Byrne
authors.forename: Aine
authors.initials: A
authors.lastname: Monaghan
authors.forename: Seamus
authors.initials: S
authors.lastname: Fanning
authors.forename: Declan
authors.initials: D
authors.lastname: Bolton
mesh_terms: D001483:Base Sequence; D004926:Escherichia coli / Q000145:classification* / Q000235:genetics* / Q000378:metabolism / Q000472:pathogenicity; D029968:Escherichia coli Proteins / Q000235:genetics* / Q000378:metabolism; D008969:Molecular Sequence Data; D005810:Multigene Family; D019081:O Antigens / Q000235:genetics* / Q000378:metabolism; D016133:Polymerase Chain Reaction / Q000379:methods*; D012703:Serotyping / Q000379:methods*
chemical_list: D029968:Escherichia coli Proteins; D019081:O Antigens