title: A universal TagModule collection for parallel genetic analysis of microorganisms.
abstract: Systems-level analyses of non-model microorganisms are limited by the existence of numerous uncharacterized genes and a corresponding over-reliance on automated computational annotations. One solution to this challenge is to disrupt gene function using DNA tag technology, which has been highly successful in parallelizing reverse genetics in Saccharomyces cerevisiae and has led to discoveries in gene function, genetic interactions and drug mechanism of action. To extend the yeast DNA tag methodology to a wide variety of microorganisms and applications, we have created a universal, sequence-verified TagModule collection. A hallmark of the 4280 TagModules is that they are cloned into a Gateway entry vector, thus facilitating rapid transfer to any compatible genetic system. Here, we describe the application of the TagModules to rapidly generate tagged mutants by transposon mutagenesis in the metal-reducing bacterium Shewanella oneidensis MR-1 and the pathogenic yeast Candida albicans. Our results demonstrate the optimal hybridization properties of the TagModule collection, the flexibility in applying the strategy to diverse microorganisms and the biological insights that can be gained from fitness profiling tagged mutant collections. The publicly available TagModule collection is a platform-independent resource for the functional genomics of a wide range of microbial systems in the post-genome era.
authors.affiliation: Department of Genetics, Stanford University, Palo Alto, CA 94305, USA.
authors.forename: Julia
authors.initials: J
authors.lastname: Oh
authors.forename: Eula
authors.initials: E
authors.lastname: Fung
authors.forename: Morgan N
authors.initials: MN
authors.lastname: Price
authors.forename: Paramvir S
authors.initials: PS
authors.lastname: Dehal
authors.forename: Ronald W
authors.initials: RW
authors.lastname: Davis
authors.forename: Guri
authors.initials: G
authors.lastname: Giaever
authors.forename: Corey
authors.initials: C
authors.lastname: Nislow
authors.forename: Adam P
authors.initials: AP
authors.lastname: Arkin
authors.forename: Adam
authors.initials: A
authors.lastname: Deutschbauer
mesh_terms: D002176:Candida albicans / Q000235:genetics*; D004251:DNA Transposable Elements; D016254:Mutagenesis, Insertional / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis; D016324:Sequence Tagged Sites; D020592:Shewanella / Q000235:genetics*
chemical_list: D004251:DNA Transposable Elements