CCancer: a bird's eye view on gene lists reported in cancer-related studies.
CCancer is an automatically collected database of gene lists, which were reported mostly by experimental studies in various biological and clinical contexts. At the moment, the database covers 3369 gene lists extracted from 2644 papers published in approximately 80 peer-reviewed journals. As input, CCancer accepts a gene list. An enrichment analyses is implemented to generate, as output, a highly informative survey over recently published studies that report gene lists, which significantly intersect with the query gene list. A report on gene pairs from the input list which were frequently reported together by other biological studies is also provided. CCancer is freely available at http://mips.helmholtz-muenchen.de/proj/ccancer.
Dietmann
Sabine
S
Freiburg Center for Data Analysis and Modeling, University of Freiburg, Eckerstr. 1, D-79104 Freiburg, Germany.
Lee
Wanseon
W
Wong
Philip
P
Rodchenkov
Igor
I
Antonov
Alexey V
AV
D000814:Aniline Compounds / Q000627:therapeutic use; D016922:Cellular Senescence / Q000235:genetics; D057225:Data Mining; D030541:Databases, Genetic; D015972:Gene Expression Regulation, Neoplastic; D052138:Genes, Neoplasm; D006801:Humans; D020407:Internet; D009010:Monte Carlo Method; D009363:Neoplasm Proteins / Q000235:genetics; D009369:Neoplasms / Q000235:genetics*; D009570:Nitriles / Q000627:therapeutic use; D047428:Protein Kinase Inhibitors / Q000627:therapeutic use; D011804:Quinolines / Q000627:therapeutic use; D012984:Software
D000814:Aniline Compounds; D009363:Neoplasm Proteins; D009570:Nitriles; D047428:Protein Kinase Inhibitors; D011804:Quinolines; C471992:bosutinib