Correlation between rotavirus A genotypes detected in hospitalized children and sewage samples in 2006, Córdoba, Argentina.
Routine rotavirus A (RV-A) surveillance is based on clinical cases, so only symptomatic infections are reported. The objective of this study was to determine whether the RV-A genotypes and cold seasonal pattern described in patients with diarrhea is reflected by sewage surveillance, which could be representative of the RV-A genotypes circulating in the population. The genotype distribution of RV-A in effluent samples from a local sewage treatment plant was compared to those from local clinical cases. A total of 52 sewage samples and 70 stool specimens from children with acute non-bacterial diarrhea were collected from January to December 2006. The effluent specimens were concentrated and RNA extracts from concentrated sewage and clinical samples were genotyped for the rotavirus VP7 gene. The proportional distribution of the RV-A G-genotypes in sewage and clinical samples during the cold season was similar: G1 accounted for 26.6% of the typed sewage isolates and 28.8% of the clinical infections; G3 type accounted for 21.9% and 25.8%; G2 type 15.6% and 10.6%; G4 type 17.2% and 21.2%; G8 type 1.6% and 0%; and the G9 type 17.2% and 13.6%, respectively. A similar picture of RV-A genotype detection was obtained in sewage samples collected during the cold and warm seasons. The results indicate that there is a correlation between genotypes of RV-A isolates from human diarrheic patients and of those from sewage samples. In addition, sewage monitoring highlighted the uniform all-year RV-A circulation, which was in contrast to the peak incidence of RV-A infection in the community.
Virology Institute Dr. J M Vanella, School of Medical Sciences, National University of Cordoba, Córdoba, Argentina. patricia_barril@yahoo.com.ar
P A
PA
Barril
M O
MO
Giordano
M B
MB
Isa
G
G
Masachessi
L J
LJ
Ferreyra
A A
AA
Castello
G
G
Glikmann
S V
SV
Nates
D000956:Antigens, Viral / Q000235:genetics; D001118:Argentina / Q000453:epidemiology; D036022:Capsid Proteins / Q000235:genetics; D002675:Child, Preschool; D004783:Environmental Microbiology; D005243:Feces / Q000821:virology; D006760:Hospitalization; D006801:Humans; D007223:Infant; D007231:Infant, Newborn; D012401:Rotavirus / Q000235:genetics* / Q000302:isolation & purification; D012400:Rotavirus Infections / Q000453:epidemiology* / Q000821:virology; D012621:Seasons; D012722:Sewage / Q000821:virology*
D000956:Antigens, Viral; D036022:Capsid Proteins; D012722:Sewage; C050779:VP7 protein, Rotavirus