Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8.
Carbohydrate-active enzyme glycosyltransferase family 8 (GT8) includes the plant galacturonosyltransferase1-related gene family of proven and putative alpha-galacturonosyltransferase (GAUT) and GAUT-like (GATL) genes. We computationally identified and investigated this family in 15 fully sequenced plant and green algal genomes and in the National Center for Biotechnology Information nonredundant protein database to determine the phylogenetic relatedness of the GAUTs and GATLs to other GT8 family members. The GT8 proteins fall into three well-delineated major classes. In addition to GAUTs and GATLs, known or predicted to be involved in plant cell wall biosynthesis, class I also includes a lower plant-specific GAUT and GATL-related (GATR) subfamily, two metazoan subfamilies, and proteins from other eukaryotes and cyanobacteria. Class II includes galactinol synthases and plant glycogenin-like starch initiation proteins that are not known to be directly involved in cell wall synthesis, as well as proteins from fungi, metazoans, viruses, and bacteria. Class III consists almost entirely of bacterial proteins that are lipooligo/polysaccharide alpha-galactosyltransferases and alpha-glucosyltransferases. Sequence motifs conserved across all GT8 subfamilies and those specific to plant cell wall-related GT8 subfamilies were identified and mapped onto a predicted GAUT1 protein structure. The tertiary structure prediction identified sequence motifs likely to represent key amino acids involved in catalysis, substrate binding, protein-protein interactions, and structural elements required for GAUT1 function. The results show that the GAUTs, GATLs, and GATRs have a different evolutionary origin than other plant GT8 genes, were likely acquired from an ancient cyanobacterium (Synechococcus) progenitor, and separate into unique subclades that may indicate functional specialization.
Yin
Yanbin
Y
Computational Systems Biology Laboratory and Institute of Bioinformatics, University of Georgia, Athens, Georgia 30602, USA.
Chen
Huiling
H
Hahn
Michael G
MG
Mohnen
Debra
D
Xu
Ying
Y
D020816:Amino Acid Motifs; D002473:Cell Wall / Q000201:enzymology*; D017124:Conserved Sequence; D056890:Eukaryota / Q000201:enzymology / Q000235:genetics; D019143:Evolution, Molecular; D017343:Genes, Plant; D018745:Genome, Plant; D016695:Glycosyltransferases / Q000235:genetics / Q000378:metabolism*; D005810:Multigene Family; D010802:Phylogeny; D010944:Plants / Q000201:enzymology / Q000235:genetics*; D017434:Protein Structure, Tertiary; D020539:Sequence Analysis, Protein
D016695:Glycosyltransferases