title: A near-complete genome sequence of a distinct isolate of Sugarcane yellow leaf virus from China, representing a sixth new genotype.
abstract: The 5803 nt genomic sequence of a Sugarcane yellow leaf virus (SCYLV) isolate (SCYLV-chn1) from China was determined. It covered more than 98% of the complete viral genome and contained all the six ORFs and the entire intergenic untranslated region. This isolate was most closely related to SCYLV genotype CUB (isolates CUB-YL1 and CB86010) with identities of 95.2-97.4% (nt) (93.2-97.2% aa) in ORF0, ORF1, and ORF2. Sequence comparison and phylogenetic analyses supported the view that this isolate represents a new genotype; SCYLV CHN1 was suggested as the name for this new genotype.
authors.affiliation: College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China.
authors.forename: M-Q
authors.initials: MQ
authors.lastname: Wang
authors.forename: G-H
authors.initials: GH
authors.lastname: Zhou
mesh_terms: D002681:China; D016000:Cluster Analysis; D021901:DNA, Intergenic; D016679:Genome, Viral; D005838:Genotype; D052679:Luteoviridae / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D010802:Phylogeny; D012367:RNA, Viral / Q000235:genetics*; D031786:Saccharum / Q000821:virology*; D017422:Sequence Analysis, DNA; D017385:Sequence Homology
chemical_list: D021901:DNA, Intergenic; D012367:RNA, Viral