Nonhydrolyzable ubiquitin-isopeptide isosteres as deubiquitinating enzyme probes.
We demonstrate that oxime ligation is an efficient, straightforward, and generally applicable strategy for generating nonhydrolyzable ubiquitin (Ub)-isopeptide isosteres. We synthesized nonhydrolyzable K48- and K63-linked Ub-isopeptide isosteres to investigate the selectivity of deubiquitinating enzymes for specific linkages employing surface plasmon resonance spectroscopy. The results indicate that deubiquitinating enzymes specifically recognize the local peptide sequence flanking Ub-branched lysine residues in target proteins. The described strategy allows the systematic investigation of sequence requirements for substrate selectivity of deubiquitinating enzymes.
Shanmugham
Anitha
A
Division of Cell Biology and The Netherlands Proteomics Centre, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Fish
Alexander
A
Luna-Vargas
Mark P A
MP
Faesen
Alex C
AC
El Oualid
Farid
F
Sixma
Titia K
TK
Ovaa
Huib
H
D000595:Amino Acid Sequence; D015374:Biosensing Techniques / Q000379:methods*; D010450:Endopeptidases / Q000378:metabolism*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010455:Peptides / Q000737:chemistry / Q000378:metabolism*; D011487:Protein Conformation; D013379:Substrate Specificity; D025801:Ubiquitin / Q000737:chemistry / Q000378:metabolism*
D010455:Peptides; D025801:Ubiquitin; D010450:Endopeptidases; C091939:ubiquitin isopeptidase