title: Detection and characterization of human Ureaplasma species and serovars by real-time PCR.
abstract: We designed primers and probes for the detection and discrimination of Ureaplasma parvum and U. urealyticum and their 14 serovars by real-time PCR. The analytical sensitivity and specificity of the multiplex species-specific PCR were determined by testing corresponding American Type Culture Collection (ATCC) type strains, 47 other microbial species, and human genomic DNA. The limits of the multiplex PCR were 2.8 x 10(-2) CFU/microl PCR mixture for detecting U. parvum and 4.1 x 10(-2) CFU/microl PCR mixture for detecting U. urealyticum. Clinical specificity and sensitivity were proven by comparison with culture and traditional PCR. For the detection of any Ureaplasma species, the clinical sensitivity and specificity of real-time PCR were 96.9% and 79.0%, respectively, using culture as a reference. Multiplex real-time PCR was also more sensitive than traditional PCR in discriminating the two Ureaplasma species in culture-positive subcultures. Each of the 14 monoplex serovar-specific PCR assays was specific for the corresponding ATCC type strain serovar. This new species identification PCR is specific and sensitive in the detection of Ureaplasma species in clinical specimens, and the serovar-specific PCR assays are the first set of complete genotypic assays to differentiate all 14 known Ureaplasma serovars. These assays provide quick and reliable means for investigating the epidemiology and pathogenicity of ureaplasmas at the serovar level.
authors.affiliation: Department of Pathology, University of Alabama at Birmingham, Birmingham, AL 35249, USA.
authors.forename: Li
authors.initials: L
authors.lastname: Xiao
authors.forename: John I
authors.initials: JI
authors.lastname: Glass
authors.forename: Vanya
authors.initials: V
authors.lastname: Paralanov
authors.forename: Shibu
authors.initials: S
authors.lastname: Yooseph
authors.forename: Gail H
authors.initials: GH
authors.lastname: Cassell
authors.forename: Lynn B
authors.initials: LB
authors.lastname: Duffy
authors.forename: Ken B
authors.initials: KB
authors.lastname: Waites
mesh_terms: D001431:Bacteriological Techniques / Q000379:methods*; D017931:DNA Primers / Q000235:genetics; D006801:Humans; D015345:Oligonucleotide Probes / Q000235:genetics; D016133:Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D014509:Ureaplasma / Q000145:classification* / Q000235:genetics / Q000254:growth & development / Q000302:isolation & purification*; D016869:Ureaplasma Infections / Q000175:diagnosis*
chemical_list: D017931:DNA Primers; D015345:Oligonucleotide Probes