title: [Comparison of the promoter activity of metabolism-related pabB and lpdA genes between Mycobacterium tuberculosis strains H37Rv and H37Ra].
abstract: OBJECTIVE
  Comparative genomic study revealed mutations at the promoter regions of pabB and lpdA in avirulent Mycobacterium tuberculosis strain H37Ra compared to its virulent counterpart strain H37Rv. We used LacZ reporter system to test whether those mutations will affect promoter activity and its potential relationship to virulence attenuation of H37Ra.
  
  
  METHODS
  Promoter regions of pabB and lpdA were predicted by the "Neural Network Promoter Prediction" method (http://www. fruitfly. org/seq_tools/promoter. html). Promoter sequences were PCR amplified and cloned into mycobacterial promoterless probe vector pMC210. Resultant recombinant plasmids were transformed into M. smegmatis by electroporation. The transcription activity of lacZ under the control of cloned promoters were monitored by Quantitative Real-Time RT-PCR.
  
  
  RESULTS
  Quantitative Real Time PCR results showed that the promoter activity of H37Ra pabB was six times more than that of H37Rv pabB (p < 0.05), while the promoter activity of the H37Rv lpdA was two fold of that of H37Ra lpdA (p < 0.05).
  
  
  CONCLUSIONS
  The mutations in pabB and lpdA promoters affect its expression activity. The T-A mutation in lpdA promoter may be related to virulence attenuation of H37Ra.
authors.affiliation: Institute of Preclinical Medicine and Biology Sciences, Soochow University, Suzhou 215123, China. sunqing6696432@163.com
authors.forename: Qing
authors.initials: Q
authors.lastname: Sun
authors.forename: Liangdong
authors.initials: L
authors.lastname: Lu
authors.forename: Yufeng
authors.initials: Y
authors.lastname: Yao
authors.forename: Yingwei
authors.initials: Y
authors.lastname: Zhao
mesh_terms: D000241:Adenosine / Q000235:genetics; D003001:Cloning, Molecular; D004269:DNA, Bacterial / Q000032:analysis / Q000235:genetics; D015964:Gene Expression Regulation, Bacterial / Q000235:genetics*; D005798:Genes, Bacterial / Q000235:genetics; D009154:Mutation; D009169:Mycobacterium tuberculosis / Q000235:genetics*; D011401:Promoter Regions, Genetic / Q000235:genetics*; D017422:Sequence Analysis, DNA; D013936:Thymidine / Q000235:genetics; D014158:Transcription, Genetic; D037521:Virulence Factors / Q000235:genetics*
chemical_list: D004269:DNA, Bacterial; D037521:Virulence Factors; D000241:Adenosine; D013936:Thymidine