title: The application of cytogenetics and fluorescence in situ hybridization to fine-needle aspiration in the diagnosis and subclassification of renal neoplasms.
abstract: BACKGROUND
  Percutaneous fine-needle aspiration (FNA) cytology is an important diagnostic test for the evaluation and management of selected renal masses. Cytogenetic analysis of cytology specimens can serve as an adjunct for precise classification because certain tumors are associated with specific chromosomal aberrations. This study summarizes our experience with the application of conventional cytogenetics and fluorescence in situ hybridization (FISH) to renal FNA specimens.
  
  
  METHODS
  All percutaneous renal FNAs performed during 2005 through 2008 were identified from the electronic pathology database. Results of cytogenetic and FISH analyses were correlated with the final diagnoses of the renal FNAs.
  
  
  RESULTS
  A total of 303 renal FNAs were performed. During an onsite assessment, a portion of the cytology specimen was allocated for cytogenetic analysis in 74 cases. Karyotypic analysis or FISH was successful in 44 (59%) of these. Characteristic chromosomal abnormalities were observed in 27 cases. In 17 cases, a karyotype revealed a combination of trisomies/tetrasomies and in another 5 cases, FISH revealed trisomy 7 and 17, both of which are consistent with papillary renal cell carcinoma (RCC). Two cases showed 3p deletions consistent with clear cell RCC. Trisomy 3 was observed in 1 case of clear cell RCC. Monosomy 1 and 17 was observed in a case of papillary RCC comprised oncocytic cells. In 1 case of primary renal synovial sarcoma, FISH revealed a rearrangement at the SYT locus (18q11.2).
  
  
  CONCLUSIONS
  Renal FNA specimens are amenable to analysis by cytogenetics and FISH in the diagnosis and subclassification of renal neoplasms.
authors.affiliation: Department of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109-*5054, USA. mikro@med.umich.edu
authors.forename: Michael H
authors.initials: MH
authors.lastname: Roh
authors.forename: Paola
authors.initials: P
authors.lastname: Dal Cin
authors.forename: Stuart G
authors.initials: SG
authors.lastname: Silverman
authors.forename: Edmund S
authors.initials: ES
authors.lastname: Cibas
mesh_terms: D044963:Biopsy, Fine-Needle; D002869:Chromosome Aberrations; D003582:Cytogenetics; D005240:Feasibility Studies; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D007680:Kidney Neoplasms / Q000175:diagnosis* / Q000473:pathology; D010755:Organophosphates
chemical_list: D010755:Organophosphates; C012085:tris(2,3-dibromopropyl)phosphate