MP2, density functional theory, and molecular mechanical calculations of C-H...pi and hydrogen bond interactions in a cellulose-binding module-cellulose model system.
Exploring non-covalent interactions, such as C-H...pi stacking and classical hydrogen bonding (H-bonding), between carbohydrates and carbohydrate-binding modules (CBMs) is an important task in glycobiology. The present study focuses on intermolecular interactions, such as C-Hcdots, three dots, centeredpi (sugar-aromatic stacking) and H-bonds, between methyl beta-d-glucopyranoside and l-tyrosine-a proxy model system for a cellulose-CBM complex. This work has made use of various types of quantum mechanics (QM) and molecular mechanics (MM) methods to determine which is the most accurate and computationally efficient. The calculated interaction potential energies ranged between -24 and -38kJ/mol. The larger interaction energy is due to H-bonding between the phenyl hydroxyl of tyrosine and the O4 of the sugar. Density functional theory (DFT) methods, such as BHandHLYP and B3LYP, exaggerate the H-bond. Although one of the MM methods (viz. MM+) considered in this study does maintain the C-Hcdots, three dots, centeredpi stacking configuration, it underestimates the interaction energy due to the loss of the H-bond. When the O-H bond vector is in the vicinity of O4 (O-Hcdots, three dots, centeredO4 approximately 2A, e.g., in the case of MP2/6-31G(d)), the torsional energy drops to a minimum. For this configuration, natural bond orbital (NBO) analysis also supports the presence of this H-bond which arises due to orbital interaction between one lone pair of the sugar O4 and the sigma *(O-H) orbital of the phenyl group of tyrosine. The stabilization energy due to orbital delocalization of the H-bonded system is approximately 13kJ/mol. This H-bond interaction plays an important role in controlling the CH/pi interaction geometry. Therefore, the C-Hcdots, three dots, centeredpi dispersive interaction is the secondary force, which supports the stabilization of the complex. The meta-hybrid DFT method, M05-2X, with the 6-311++G(d,p) basis set agrees well with the MP2 results and is less computationally expensive. However, the M05-2X method is strongly basis set dependent in describing this CH/pi interaction. Computed IR spectra with the MP2/6-31G(d) method show blue shifts for C1-H, C3-H, and C5-H stretching frequencies due to the C-Hcdots, three dots, centeredpi interaction. However, the M05-2X/6-311++G(d,p) method shows a small red shift for the C1-H stretching region and blue shifts for the C2-H and C3-H stretches. For the aromatic tyrosine C(delta1)-C(epsilon1) and C(delta2)-C(epsilon2) bonds in the complex, the calculated IR spectra show red shifts of 12cm(-1) (MP2/6-31G(d)) and 5cm(-1) (M05-2X/6-311++G(d,p)). This study also reports the upfield shifts of computed (1)H NMR chemical shifts due to the C-Hcdots, three dots, centeredpi interaction.
Mohamed
Mohamed Naseer Ali
MN
Department of Geosciences and the Earth & Environmental Systems Institute, The Pennsylvania State University, University Park, PA 16802, USA.
Watts
Heath D
HD
Guo
Jing
J
Catchmark
Jeffrey M
JM
Kubicki
James D
JD
D002482:Cellulose / Q000737:chemistry*; D003198:Computer Simulation; D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy / Q000592:standards; D008956:Models, Chemical; D011789:Quantum Theory; D012015:Reference Standards; D014443:Tyrosine / Q000737:chemistry
D014443:Tyrosine; D002482:Cellulose