title: Ancient genome-wide admixture extends beyond the current hybrid zone between Macaca fascicularis and M. mulatta.
abstract: Macaca fascicularis and Macaca mulatta are two of the most commonly used laboratory macaques, yet their genetic differences at a genome-wide level remain unclear. We analysed the multilocus DNA sequence data of 54 autosomal loci obtained from M. fascicularis samples from three different geographic origins and M. mulatta samples of Burmese origin. M. fascicularis shows high nucleotide diversity, four to five times higher than humans, and a strong geographic population structure between Indonesian-Malaysian and Philippine macaques. The pattern of divergence and polymorphism between M. fascicularis and M. mulatta shows a footprint of genetic exchange not only within their current hybrid zone but also across a wider range for more than 1 million years. However, genetic admixture may not be a random event in the genome. Whereas randomly selected genic and intergenic regions have the same evolutionary dynamics between the species, some cytochrome oxidase P450 (CYP) genes (major chemical metabolizing genes and potential target genes for local adaptation) have a significantly larger species divergence than other genes. By surveying CYP3A5 gene sequences of more than a hundred macaques, we identified three nonsynonymous single nucleotide polymorphisms that were highly differentiated between the macaques. The mosaic pattern of species divergence in the genomes may be a consequence of genetic differentiation under ecological adaptation and may be a salient feature in the genomes of nascent species under parapatry.
authors.affiliation: Department of Biomedical Resources, National Institute of Biomedical Innovation, 7-6-8 Saito-Asagi, Ibraki, Osaka 567-0085, Japan. nosada@lab.nig.ac.jp
authors.forename: Naoki
authors.initials: N
authors.lastname: Osada
authors.forename: Yasuhiro
authors.initials: Y
authors.lastname: Uno
authors.forename: Katsuhiko
authors.initials: K
authors.lastname: Mineta
authors.forename: Yosuke
authors.initials: Y
authors.lastname: Kameoka
authors.forename: Ichiro
authors.initials: I
authors.lastname: Takahashi
authors.forename: Keiji
authors.initials: K
authors.lastname: Terao
mesh_terms: D000818:Animals; D055028:Comparative Genomic Hybridization; D003577:Cytochrome P-450 Enzyme System / Q000235:genetics; D019143:Evolution, Molecular; D005260:Female; D005828:Genetics, Population; D016678:Genome; D006824:Hybridization, Genetic; D008252:Macaca fascicularis / Q000235:genetics*; D008253:Macaca mulatta / Q000235:genetics*; D008297:Male; D020641:Polymorphism, Single Nucleotide; D017422:Sequence Analysis, DNA; D013045:Species Specificity
chemical_list: D003577:Cytochrome P-450 Enzyme System