title: Flow cytometric analysis of genetic FRET detectors containing variable substrate sequences.
abstract: A genetic Fluorescence Resonance Energy Transfer (FRET) detector undergoes a post-translational modification (PTM)-induced conformational change that results in increased FRET. To test if the PTM-dependent FRET change can be quantified by flow cytometry, we purified and immobilized a genetic detector on microbeads and used flow cytometry to measure its FRET efficiency before and after Erk-2-mediated phosphorylation. The fluorescence ratio R between the acceptor and donor fluorescence, which was obtained by fitting a straight line through the data points in linear space, increases following phosphorylation, thus demonstrating that flow cytometry is capable of detecting a PTM-dependent FRET response. Furthermore, when Erk-2 and a genetic detector are coexpressed in bacteria, the measured R value changes with the substrate sequence with near single residue resolution. Similarly, the cells coexpressing the glycosylating enzyme O-GlcNAc transferase (OGT) and a genetic detector specific for OGT exhibit a PTM-induced change in FRET efficiency. Therefore, the combination of flow cytometry and a genetic detector may be useful to characterize the substrate specificity of a PTM enzyme and identify the sequences that are preferentially targeted for PTM in vivo.
authors.affiliation: Dept. of Chemical and Biological Engineering, University at Buffalo, Buffalo, NY 14260, USA.
authors.forename: Kok
authors.initials: K
authors.lastname: Hong Lim
authors.forename: Cheng-Kuo
authors.initials: CK
authors.lastname: Hsu
authors.forename: Sheldon
authors.initials: S
authors.lastname: Park
mesh_terms: D000595:Amino Acid Sequence; D005434:Flow Cytometry / Q000379:methods*; D031541:Fluorescence Resonance Energy Transfer; D014644:Genetic Variation / Q000235:genetics; D019950:Mitogen-Activated Protein Kinase 1 / Q000235:genetics / Q000378:metabolism*; D010766:Phosphorylation; D010957:Plasmids / Q000235:genetics / Q000378:metabolism; D013379:Substrate Specificity
chemical_list: D019950:Mitogen-Activated Protein Kinase 1