title: A negative element in the downstream region of the Rice tungro bacilliform virus promoter is orientation- and position-independent and is active with heterologous promoters.
abstract: The promoter of an Indian isolate of the pararetrovirus Rice tungro bacilliform virus (RTBV-WB) contains a negative element downstream of the transcription start site (TSS), between nucleotide residues +58 and +195 (Mathur and Dasgupta, 2007). To further characterize the element, we show, by using transient gus reporter gene assays in the cells of onion peel, rice calli and Arabidopsis leaves, that it down-regulates heterologous promoters CaMV35S and Maize ubiquitin. Quantitative measurements of transient GUS activity indicated more than 90% inhibition of reporter gene expression by the negative element. We also show, by reversing the orientation of the element downstream and by placing it in a position upstream to a constitutively expressing RTBV promoter, that the negative element is orientation- and position-independent, pointing towards its activity at the transcriptional and not post-transcriptional level.
authors.affiliation: Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India.
authors.forename: Arunima
authors.initials: A
authors.lastname: Purkayastha
authors.forename: Shweta
authors.initials: S
authors.lastname: Sharma
authors.forename: Indranil
authors.initials: I
authors.lastname: Dasgupta
mesh_terms: D017360:Arabidopsis / Q000235:genetics / Q000821:virology; D015967:Gene Expression Regulation, Viral; D017930:Genes, Reporter; D005966:Glucuronidase / Q000235:genetics / Q000378:metabolism; D007194:India; D019697:Onions / Q000235:genetics / Q000821:virology; D012275:Oryza / Q000235:genetics / Q000821:virology; D018515:Plant Leaves / Q000235:genetics / Q000821:virology; D010940:Plant Proteins / Q000235:genetics; D050436:Regulatory Elements, Transcriptional; D052641:Tungrovirus / Q000235:genetics / Q000302:isolation & purification / Q000502:physiology*; D025801:Ubiquitin / Q000235:genetics; D003313:Zea mays / Q000235:genetics
chemical_list: D010940:Plant Proteins; D025801:Ubiquitin; D005966:Glucuronidase