title: Molecular phylogeny and habitat diversification of the genus Farfugium (Asteraceae) based on nuclear rDNA and plastid DNA.
abstract: OBJECTIVE
  Farfugium (Asteraceae) is a small genus that contains the two species F. japonicum and F. hiberniflorum and is distributed along a long archipelago in east Asia. The common taxon, F. japonicum, includes three varieties associated with a wide range of habitats, including forest understorey (sciophytes), coastal crag (heliophytes) and riverbed (rheophytes). Leaf shape is an important taxonomic character within this genus and is associated with the habitat.
  
  
  METHODS
  Twenty populations that included all Farfugium taxa were collected throughout its range. Leaf morphology was measured to determine differences amongst the taxa. Phylogenetic analyses based on sequences of the internal transcribed spacer of nuclear rDNA and four plastid DNA regions (matK, trnL-trnF, trnH-psbA and rpl20-rps12) were conducted separately.
  
  
  RESULTS
  Leaf morphology was significantly different amongst taxa, but morphological variations were partly explained by adaptation to certain environmental conditions that each population inhabited. Molecular phylogenies for the nDNA internal transcribed spacer and cpDNA were consistent in classifying F. hiberniflorum and the Taiwanese var. formosanum, whilst suggesting polyphyletic origins for the rheophyte, sciophyte and heliophyte taxa. All samples from the southern Ryukyus (Japan) and Taiwan clustered into a monophyletic group, which corroborates the land configuration theory involving Quaternary land-bridge formation and subsequent fragmentation into islands. The incongruence between the two DNA datasets may imply traces of introgressive hybridization and/or incomplete lineage sorting.
  
  
  CONCLUSIONS
  The occurrence of rheophyte, sciophyte and heliophyte plants within Farfugium may be attributable to their isolation on islands and subsequent adaptation to the riparian, coastal crag and forest understorey environments, following their migration over the Quaternary land-bridge formation along their distribution range. Nearly identical DNA sequences coupled with highly divergent morphologies amongst these taxa suggest that diversification was rapid.
authors.affiliation: Research Institute for Humanity and Nature, Kamigamo Motoyama 457-4 Kita, Kyoto, Japan. cer48670@nyc.odn.ne.jp
authors.forename: Naofumi
authors.initials: N
authors.lastname: Nomura
authors.forename: Tokushiro
authors.initials: T
authors.lastname: Takaso
authors.forename: Ching-I
authors.initials: CI
authors.lastname: Peng
authors.forename: Yoshiko
authors.initials: Y
authors.lastname: Kono
authors.forename: Kazuo
authors.initials: K
authors.lastname: Oginuma
authors.forename: Yuki
authors.initials: Y
authors.lastname: Mitsui
authors.forename: Hiroaki
authors.initials: H
authors.lastname: Setoguchi
mesh_terms: D019659:Asteraceae / Q000145:classification* / Q000235:genetics; D002467:Cell Nucleus / Q000235:genetics*; D004275:DNA, Ribosomal / Q000235:genetics*; D017753:Ecosystem; D010802:Phylogeny; D018087:Plastids / Q000235:genetics*
chemical_list: D004275:DNA, Ribosomal