title: Statistical consideration for clinical biomarker research in bladder cancer.
abstract: OBJECTIVE
  To critically review and illustrate current methodological and statistical considerations for bladder cancer biomarker discovery and evaluation.
  
  
  METHODS
  Original, review, and methodological articles, and editorials were reviewed and summarized.
  
  
  RESULTS
  Biomarkers may be useful at multiple stages of bladder cancer management: early detection, diagnosis, staging, prognosis, and treatment; however, few novel biomarkers are currently used in clinical practice. The reasons for this disjunction are many and reflect the long and difficult pathway from candidate biomarker discovery to clinical assay, and the lack of coherent and comprehensive processes (pipelines) for biomarker development. Conceptually, the development of new biomarkers should be a process that is similar to therapeutic drug evaluation-a highly regulated process with carefully regulated phases from discovery to human applications. In a further effort to address the pervasive problem of inadequacies in the design, analysis, and reporting of biomarker prognostic studies, a set of reporting recommendations are discussed. For example, biomarkers should provide unique information that adds to known clinical and pathologic information. Conventional multivariable analyses are not sufficient to demonstrate improved prediction of outcomes. Predictive models, including or excluding any new putative biomarker, need to show clinically significant improvement of performance in order to claim any real benefit. Towards this end, proper model building, avoidance of overfitting, and external validation are crucial. In addition, it is important to choose appropriate performance measures dependent on outcome and prediction type and to avoid the use of cutpoints. Biomarkers providing a continuous score provide potentially more useful information than cutpoints since risk fits a continuum model. Combination of complementary and independent biomarkers is likely to better capture the biological potential of a tumor than any single biomarker. Finally, methods that incorporate clinical consequences such as decision curve analysis are crucial to the evaluation of biomarkers.
  
  
  CONCLUSIONS
  Attention to sound design and statistical practice should be delivered as early as possible and will help maximize the promise of biomarkers for patient care. Studies should include a measure of predictive accuracy and clinical decision-analysis. External validation using data from an independent cohort provides the strongest evidence that a model is valid. There is a need for adequately assessed clinical biomarkers in bladder cancer.
authors.affiliation: Department of Surgery/Division of Urology, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA. sfshariat@gmail.com
authors.forename: Shahrokh F
authors.initials: SF
authors.lastname: Shariat
authors.forename: Yair
authors.initials: Y
authors.lastname: Lotan
authors.forename: Andrew
authors.initials: A
authors.lastname: Vickers
authors.forename: Pierre I
authors.initials: PI
authors.lastname: Karakiewicz
authors.forename: Bernd J
authors.initials: BJ
authors.lastname: Schmitz-Dräger
authors.forename: Peter J
authors.initials: PJ
authors.lastname: Goebell
authors.forename: Nuria
authors.initials: N
authors.lastname: Malats
mesh_terms: D015415:Biomarkers / Q000032:analysis; D035843:Biomedical Research / Q000706:statistics & numerical data; D006801:Humans; D001749:Urinary Bladder Neoplasms / Q000175:diagnosis*; D054928:Validation Studies as Topic
chemical_list: D015415:Biomarkers