title: Combined data preprocessing and multivariate statistical analysis characterizes fed-batch culture of mouse hybridoma cells for rational medium design.
abstract: We present an integrated framework for characterizing fed-batch cultures of mouse hybridoma cells producing monoclonal antibody (mAb). This framework systematically combines data preprocessing, elemental balancing and statistical analysis technique. Initially, specific rates of cell growth, glucose/amino acid consumptions and mAb/metabolite productions were calculated via curve fitting using logistic equations, with subsequent elemental balancing of the preprocessed data indicating the presence of experimental measurement errors. Multivariate statistical analysis was then employed to understand physiological characteristics of the cellular system. The results from principal component analysis (PCA) revealed three major clusters of amino acids with similar trends in their consumption profiles: (i) arginine, threonine and serine, (ii) glycine, tyrosine, phenylalanine, methionine, histidine and asparagine, and (iii) lysine, valine and isoleucine. Further analysis using partial least square (PLS) regression identified key amino acids which were positively or negatively correlated with the cell growth, mAb production and the generation of lactate and ammonia. Based on these results, the optimal concentrations of key amino acids in the feed medium can be inferred, potentially leading to an increase in cell viability and productivity, as well as a decrease in toxic waste production. The study demonstrated how the current methodological framework using multivariate statistical analysis techniques can serve as a potential tool for deriving rational medium design strategies.
authors.affiliation: Bioprocessing Technology Institute, Agency for Science, Technology and Research, 20 Biopolis Way, #06-01, Centros, Singapore 138668, Singapore.
authors.forename: Suresh
authors.initials: S
authors.lastname: Selvarasu
authors.forename: Do Yun
authors.initials: DY
authors.lastname: Kim
authors.forename: Iftekhar A
authors.initials: IA
authors.lastname: Karimi
authors.forename: Dong-Yup
authors.initials: DY
authors.lastname: Lee
mesh_terms: D000596:Amino Acids / Q000378:metabolism; D000641:Ammonia / Q000378:metabolism; D000818:Animals; D000911:Antibodies, Monoclonal / Q000378:metabolism; D018929:Cell Culture Techniques / Q000379:methods*; D019295:Computational Biology / Q000379:methods*; D006825:Hybridomas / Q000166:cytology* / Q000378:metabolism; D019344:Lactic Acid / Q000378:metabolism; D016018:Least-Squares Analysis; D051379:Mice; D015999:Multivariate Analysis; D025341:Principal Component Analysis; D049490:Systems Biology
chemical_list: D000596:Amino Acids; D000911:Antibodies, Monoclonal; D019344:Lactic Acid; D000641:Ammonia