title: Markers on bovine chromosome 20 associated with carcass quality and composition traits and incidence of contracting infectious bovine keratoconjunctivitis.
abstract: The objective of this study was to use single nucleotide polymorphisms (SNP) located on bovine chromosome 20 to fine map a previously identified QTL associated with the incidence of infectious bovine keratoconjunctivitis (IBK). Crossbred steers (GPE 7; n = 539) derived from sires of 7 Bos taurus breeds and having veterinary records related to IBK were used to test the association of a total of 105 SNP located under the most relevant region of the QTL. Five SNP were significantly associated with IBK (P < 0.05), as animals inheriting differing genotypes from individual SNP exhibited significantly different incidence rates of IBK. The population also had numerous other phenotypes, supporting evaluation of association of the 105 markers with carcass traits to identify potential antagonistic effects of implementing a marker-assisted selection program for IBK susceptibility. An association of 2 SNP for marbling and tenderness was identified, along with 3 SNP associated with the percentage of carcasses classified as choice. Four SNP were significantly associated with fat yield, 2 SNP with longissimus muscle area, and 2 additional SNP with dressing percentage. The association of these markers indicates that the evaluated QTL region may, in fact, harbor the causative mutations responsible for the variation observed in IBK susceptibility and carcass quality and composition traits. Thus, further evaluation of SNP in this region is necessary in order to identify mutations accounting for the largest degree of variation for IBK and carcass traits.
authors.affiliation: USDA, ARS, U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, USA.
authors.forename: M D
authors.initials: MD
authors.lastname: Garcia
authors.forename: L
authors.initials: L
authors.lastname: Matukumalli
authors.forename: T L
authors.initials: TL
authors.lastname: Wheeler
authors.forename: S D
authors.initials: SD
authors.lastname: Shackelford
authors.forename: T P L
authors.initials: TP
authors.lastname: Smith
authors.forename: E
authors.initials: E
authors.lastname: Casas
mesh_terms: D000818:Animals; D001823:Body Composition / Q000235:genetics; D002417:Cattle; D002418:Cattle Diseases / Q000235:genetics / Q000382:microbiology*; D002875:Chromosomes; D005838:Genotype; D015994:Incidence; D007639:Keratoconjunctivitis, Infectious / Q000235:genetics* / Q000382:microbiology; D008297:Male; D020641:Polymorphism, Single Nucleotide; D040641:Quantitative Trait Loci