22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants.
The effect of RNA silencing in plants can be amplified if the production of secondary small interfering RNAs (siRNAs) is triggered by the interaction of microRNAs (miRNAs) or siRNAs with a long target RNA. miRNA and siRNA interactions are not all equivalent, however; most of them do not trigger secondary siRNA production. Here we use bioinformatics to show that the secondary siRNA triggers are miRNAs and transacting siRNAs of 22 nt, rather than the more typical 21-nt length. Agrobacterium-mediated transient expression in Nicotiana benthamiana confirms that the siRNA-initiating miRNAs, miR173 and miR828, are effective as triggers only if expressed in a 22-nt form and, conversely, that increasing the length of miR319 from 21 to 22 nt converts it to an siRNA trigger. We also predicted and validated that the 22-nt miR771 is a secondary siRNA trigger. Our data demonstrate that the function of small RNAs is influenced by size, and that a length of 22 nt facilitates the triggering of secondary siRNA production.
Chen
Ho-Ming
HM
Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.
Chen
Li-Teh
LT
Patel
Kanu
K
Li
Yi-Hang
YH
Baulcombe
David C
DC
Wu
Shu-Hsing
SH
D017360:Arabidopsis / Q000235:genetics / Q000378:metabolism; D001483:Base Sequence; D020868:Gene Silencing; D035683:MicroRNAs / Q000096:biosynthesis / Q000235:genetics; D010944:Plants / Q000235:genetics* / Q000378:metabolism*; D030821:Plants, Genetically Modified; D018749:RNA, Plant / Q000096:biosynthesis* / Q000235:genetics*; D034741:RNA, Small Interfering / Q000096:biosynthesis* / Q000235:genetics*; D012231:Rhizobium / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D014026:Nicotiana / Q000235:genetics / Q000378:metabolism
C534587:MIRN173 microRNA, Arabidopsis; D035683:MicroRNAs; D018749:RNA, Plant; D034741:RNA, Small Interfering