A moment invariant for evaluating the chirality of three-dimensional objects.
Chirality is an important feature of three-dimensional objects and a key concept in chemistry, biology and many other disciplines. However, it has been difficult to quantify, largely owing to computational complications. Here we present a general chirality measure, called the chiral invariant (CI), which is applicable to any three-dimensional object containing a large amount of data. The CI distinguishes the hand of the object and quantifies the degree of its handedness. It is invariant to the translation, rotation and scale of the object, and tolerant to a modest amount of noise in the experimental data. The invariant is expressed in terms of moments and can be computed in almost no time. Because of its universality and computational efficiency, the CI is suitable for a wide range of pattern-recognition problems. We demonstrate its applicability to molecular atomic models and their electron density maps. We show that the occurrence of the conformations of the macromolecular polypeptide backbone is related to the value of the CI of the constituting peptide fragments. We also illustrate how the CI can be used to assess the quality of a crystallographic electron density map.
Hattne
Johan
J
European Molecular Biology Laboratory, c/o DESY, Notkestrasse 85, Hamburg, Germany.
Lamzin
Victor S
VS
D000409:Alanine / Q000737:chemistry; D001713:Biphenyl Compounds / Q000737:chemistry; D004151:Dipeptides / Q000737:chemistry; D008958:Models, Molecular; D008968:Molecular Conformation; D010446:Peptide Fragments / Q000737:chemistry; D010940:Plant Proteins / Q000737:chemistry; D013644:Tartrates / Q000737:chemistry
D000409:Alanine; D001713:Biphenyl Compounds; D004151:Dipeptides; D010446:Peptide Fragments; D010940:Plant Proteins; D013644:Tartrates; C010574:biphenyl; C029768:tartaric acid