RefProtDom: a protein database with improved domain boundaries and homology relationships.
RefProtDom provides a set of divergent query domains, originally selected from Pfam, and full-length proteins containing their homologous domains, with diverse architectures, for evaluating pair-wise and iterative sequence similarity searches. Pfam homology and domain boundary annotations in the target library were supplemented using local and semi-global searches, PSI-BLAST searches, and SCOP and CATH classifications.


BACKGROUND
RefProtDom is available from http://faculty.virginia.edu/wrpearson/fasta/PUBS/gonzalez09a.
Gonzalez
Mileidy W
MW
Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA. miledywgonzalez@gmail.com
Pearson
William R
WR
D030562:Databases, Protein; D017434:Protein Structure, Tertiary; D011506:Proteins; D012984:Software
D011506:Proteins