title: One-step acquisition of functional biomolecules from tissues.
abstract: Direct determination of functional biomolecular chemistry of clinically relevant tissues in vivo is a challenging task. Current approaches, based on tissue retrieval by biopsy and subsequent solubilization, are limited in terms of accurate representation of tissue constituents, reproducibility, and retention of functionality of solubilized tissue biomolecules. Using a pool of known surfactants, we designed and screened a large combinatorial library of surfactant formulations, which led to the discovery of rare synergistic formulations that greatly enhance tissue solubilization as well as preserve bioactivity of solubilized molecules, in particular proteins. By combining these formulations with a short ultrasound application, we developed a tissue sampling method--STAMP (Surfactant-based Tissue Acquisition for Molecular Profiling)--for rapid one-step determination of functional tissue chemistry in vivo. We specifically demonstrate STAMP-assisted profiling of a multitude of proteins, lipids, and genomic DNA in skin and mucosal tissues. Applications of this sampling methodology to rapid molecular diagnostics of cutaneous allergies and infectious diseases are also presented.
authors.affiliation: Department of Chemical Engineering, University of California, Santa Barbara, CA 93106, USA.
authors.forename: Sumit
authors.initials: S
authors.lastname: Paliwal
authors.forename: Makoto
authors.initials: M
authors.lastname: Ogura
authors.forename: Samir
authors.initials: S
authors.lastname: Mitragotri
mesh_terms: D000818:Animals; D004247:DNA / Q000032:analysis* / Q000737:chemistry / Q000302:isolation & purification; D004586:Electrophoresis / Q000379:methods; D006801:Humans; D006967:Hypersensitivity / Q000175:diagnosis / Q000378:metabolism; D008055:Lipids / Q000032:analysis* / Q000737:chemistry / Q000302:isolation & purification; D051379:Mice; D008958:Models, Molecular; D009092:Mucous Membrane / Q000737:chemistry; D009690:Nucleic Acid Conformation; D057089:Pathology, Molecular / Q000379:methods; D011487:Protein Conformation; D011506:Proteins / Q000032:analysis* / Q000737:chemistry / Q000302:isolation & purification; D015203:Reproducibility of Results; D012867:Skin / Q000737:chemistry; D012871:Skin Diseases / Q000175:diagnosis / Q000378:metabolism; D013501:Surface-Active Agents / Q000032:analysis / Q000737:chemistry / Q000302:isolation & purification
chemical_list: D008055:Lipids; D011506:Proteins; D013501:Surface-Active Agents; D004247:DNA