title: Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes.
abstract: In recent decades, our knowledge of the genetics and functional genomics of drug-metabolizing enzymes has increased and a wealth of data on drug-related 'omics' has become available. Despite the availability of large amounts of biological information on xenobiotic biotransformation, the number of available biotransformation pathway maps that can easily be used for visualization of multiple omics data is limited. Here, we created integrated biotransformation pathway maps suitable for multiple omics analysis using PathVisio. The ease of visualizing data on these maps was demonstrated by using published microarray data from human hepatocyte-like cell models, exemplifying - where a sufficient capacity for metabolizing chemicals is a prerequisite for a suited model - how the biotransformation pathway maps can be used for model selection.
authors: Department of Health Risk Analysis and Toxicology, Maastricht University, The Netherlands. danyel.jennen@grat.unimaas.nl
authors: Danyel G J
authors: DG
authors: Jennen
authors: Stan
authors: S
authors: Gaj
authors: Pieter J
authors: PJ
authors: Giesbertz
authors: Joost H M
authors: JH
authors: van Delft
authors: Chris T
authors: CT
authors: Evelo
authors: Jos C S
authors: JC
authors: Kleinjans
mesh_terms: D001711:Biotransformation; D016208:Databases, Factual; D006801:Humans; D008658:Inactivation, Metabolic; D008099:Liver / Q000378:metabolism; D008954:Models, Biological; D004364:Pharmaceutical Preparations / Q000378:metabolism*; D012984:Software
chemical_list: D004364:Pharmaceutical Preparations