title: Evolution of human receptor binding affinity of H1N1 hemagglutinins from 1918 to 2009 pandemic influenza A virus.
abstract: The recent outbreak of the novel 2009 H1N1 influenza in humans has focused global attention on this virus, which could potentially have introduced a more dangerous pandemic of influenza flu. In the initial step of the viral attachment, hemagglutinin (HA), a viral glycoprotein surface, is responsible for the binding to the human SIA alpha2,6-linked sialopentasaccharide host cell receptor (hHAR). Dynamical and structural properties, based on molecular dynamics simulations of the four different HAs of Spanish 1918 (H1-1918), swine 1930 (H1-1930), seasonal 2005 (H1-2005), and a novel 2009 (H1-2009) H1N1 bound to the hHAR were compared. In all four HA-hHAR complexes, major interactions with the receptor binding were gained from HA residue Y95 and the conserved HA residues of the 130-loop, 190-helix, and 220-loop. However, introduction of the charged HA residues K145 and E227 in the 2009 HA binding pocket was found to increase the HA-hHAR binding efficiency in comparison to the three previously recognized H1N1 strains. Changing of the noncharged HA G225 residue to a negatively charged D225 provides a larger number of hydrogen-bonding interactions. The increase in hydrophilicity of the receptor binding region is apparently an evolution of the current pandemic flu from the 1918 Spanish, 1930 swine, and 2005 seasonal strains. Detailed analysis could help the understanding of how different HAs effectively attach and bind with the hHAR.
authors: Department of Chemistry, Faculty of Science, Mahasarakham University, Mahasarakham, 44150, Thailand.
authors: Nadtanet
authors: N
authors: Nunthaboot
authors: Thanyada
authors: T
authors: Rungrotmongkol
authors: Maturos
authors: M
authors: Malaisree
authors: Nopporn
authors: N
authors: Kaiyawet
authors: Panita
authors: P
authors: Decha
authors: Pornthep
authors: P
authors: Sompornpisut
authors: Yong
authors: Y
authors: Poovorawan
authors: Supot
authors: S
authors: Hannongbua
mesh_terms: D000595:Amino Acid Sequence; D001665:Binding Sites; D006389:Hemagglutinins, Viral / Q000737:chemistry / Q000378:metabolism*; D054884:Host-Pathogen Interactions; D006801:Humans; D006860:Hydrogen Bonding; D053118:Influenza A Virus, H1N1 Subtype / Q000737:chemistry / Q000378:metabolism*; D007251:Influenza, Human / Q000378:metabolism*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009844:Oligosaccharides / Q000737:chemistry / Q000378:metabolism*; D009976:Orthomyxoviridae Infections / Q000378:metabolism; D011485:Protein Binding
chemical_list: D006389:Hemagglutinins, Viral; D009844:Oligosaccharides