title: Semi-automated segmentation of the sigmoid and descending colon for radiotherapy planning using the fast marching method.
abstract: A fast and accurate segmentation of organs at risk, such as the healthy colon, would be of benefit for planning of radiotherapy, in particular in an adaptive scenario. For the treatment of pelvic tumours, a great challenge is the segmentation of the most adjacent and sensitive parts of the gastrointestinal tract, the sigmoid and descending colon. We propose a semi-automated method to segment these bowel parts using the fast marching (FM) method. Standard 3D computed tomography (CT) image data obtained from routine radiotherapy planning were used. Our pre-processing steps distinguish the intestine, muscles and air from connective tissue. The core part of our method separates the sigmoid and descending colon from the muscles and other segments of the intestine. This is done by utilizing the ability of the FM method to compute a specified minimal energy functional integrated along a path, and thereby extracting the colon centre line between user-defined control points in the sigmoid and descending colon. Further, we reconstruct the tube-shaped geometry of the sigmoid and descending colon by fitting ellipsoids to points on the path and by adding adjacent voxels that are likely voxels belonging to these bowel parts. Our results were compared to manually outlined sigmoid and descending colon, and evaluated using the Dice coefficient (DC). Tests on 11 patients gave an average DC of 0.83 (+/-0.07) with little user interaction. We conclude that the proposed method makes it possible to fast and accurately segment the sigmoid and descending colon from routine CT image data.
authors.affiliation: Department of Biomedicine, University of Bergen, Bergen, Norway.
authors.forename: Are
authors.initials: A
authors.lastname: Losnegård
authors.forename: Liv Bolstad
authors.initials: LB
authors.lastname: Hysing
authors.forename: Ludvig Paul
authors.initials: LP
authors.lastname: Muren
authors.forename: Erlend
authors.initials: E
authors.lastname: Hodneland
authors.forename: Arvid
authors.initials: A
authors.lastname: Lundervold
mesh_terms: D001331:Automation; D044683:Colon, Descending / Q000000981:diagnostic imaging* / Q000528:radiation effects; D012809:Colon, Sigmoid / Q000000981:diagnostic imaging* / Q000528:radiation effects; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D058958:Organs at Risk / Q000000981:diagnostic imaging* / Q000528:radiation effects; D011880:Radiotherapy Planning, Computer-Assisted / Q000379:methods*; D015203:Reproducibility of Results; D014057:Tomography, X-Ray Computed / Q000379:methods*