title: Gene ontology study of methyl jasmonate-treated and non-treated hairy roots of Panax ginseng to identify genes involved in secondary metabolic pathway.
abstract: The roots of Panax ginseng C.A. Meyer, known as Korean ginseng have been a valuable and important folk medicine in East Asian countries. It mainly used to maintain the homeostasis of the human body, with the presence ofginsenosides and non-saponin compounds like phenol compounds, acidic polysaccharides and polyethylene compounds. Functional genomics aid to annotate based on gene ontology. In this study, we focused on the genes involving in secondary metabolic pathways and to visualize temporal changes of gene expression in ginseng hairy roots with methyl ester methyl jasmonate (MeJA) along with non-treated hairy roots. A 5.774 EST clones were clustered and assembled as 501 contigs and 2.955 singletons. Annotations categorized with molecular functions, biological processes, cellular compounds of gene ontological terms and biochemical functions, enzyme commission to sequences were assigned to metabolic pathways of Kyoto Encyclopedia of Genes and Genomes database. Comparatively, EST sequences are assigned to cellular process, metabolic process, biotic and abiotic stress stimuli, developmental and biological regulations and transports are up-regulated 2-3 fold in MeJA treated hairy roots. 46 different sub groups of enzymes found in the MeJA treated plants. These annotated ESTs represents a significant proportion of the P. ginseng and provides molecular resource for developmental of microarrays for gene expression studies concerning development, metabolism and reproduction.
authors.affiliation: Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University, Yongin, 449-701.
authors.forename: S
authors.initials: S
authors.lastname: Sathiyamoorthy
authors.forename: J G
authors.initials: JG
authors.lastname: In
authors.forename: S
authors.initials: S
authors.lastname: Gayathri
authors.forename: Y Ju
authors.initials: YJ
authors.lastname: Kim
authors.forename: D Ch
authors.initials: DCh
authors.lastname: Yang
mesh_terms: D000085:Acetates / Q000494:pharmacology*; D003517:Cyclopentanes / Q000494:pharmacology*; D030541:Databases, Genetic; D020224:Expressed Sequence Tags; D017343:Genes, Plant / Q000502:physiology*; D054883:Oxylipins / Q000494:pharmacology*; D005894:Panax / Q000235:genetics* / Q000378:metabolism; D010937:Plant Growth Regulators / Q000494:pharmacology*; D018517:Plant Roots / Q000235:genetics* / Q000378:metabolism
chemical_list: D000085:Acetates; D003517:Cyclopentanes; D054883:Oxylipins; D010937:Plant Growth Regulators; C072239:methyl jasmonate