title: Reductive cleavage mechanism of Co-C bond in cobalamin-dependent methionine synthase.
abstract: The key step in the catalytic cycle of methionine synthase (MetH) is the transfer of a methyl group from the methylcobalamin (MeCbl) cofactor to homocysteine (Hcy). This mechanism has been traditionally viewed as an S(N)2-type reaction, but a different mechanism based on one-electron reduction of the cofactor (reductive cleavage) has been recently proposed. In this work, we analyze whether this mechanism is plausible from a theoretical point of view. By means of a combination of gas-phase as well as hybrid QM/MM calculations, we show that cleavage of the Co-C bond in a MeCbl···Hcy complex (Hcy = methylthiolate substrate (Me-S(-)), a structural mimic of deprotonated homocysteine) proceeds via a [Co(III)(corrin(*-))]-Me···*S-Me diradical configuration, involving electron transfer (ET) from a π*(corrin)-type state to a σ*(Co-C) one, and the methyl transfer displays an energy barrier ≤8.5 kcal/mol. This value is comparable to the one previously computed for the alternative S(N)2 reaction pathway (10.5 kcal/mol). However, the ET-based reductive cleavage pathway does not impose specific geometrical and distance constraints with respect to substrate and cofactor, as does the S(N)2 pathway. This might be advantageous from the enzymatic point of view because in that case, a methyl group can be transferred efficiently at longer distances.
authors.affiliation: Computer Simulation and Modeling Laboratory (CoSMoLab), Parc Científic de Barcelona, Baldiri Reixac 10-12, 08028 Barcelona, Spain.
authors.forename: Mercedes
authors.initials: M
authors.lastname: Alfonso-Prieto
authors.forename: Xevi
authors.initials: X
authors.lastname: Biarnés
authors.forename: Manoj
authors.initials: M
authors.lastname: Kumar
authors.forename: Carme
authors.initials: C
authors.lastname: Rovira
authors.forename: Pawel M
authors.initials: PM
authors.lastname: Kozlowski
mesh_terms: D013766:5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase / Q000737:chemistry* / Q000378:metabolism; D002244:Carbon / Q000737:chemistry*; D003035:Cobalt / Q000737:chemistry*; D004579:Electron Transport; D006710:Homocysteine / Q000737:chemistry; D011789:Quantum Theory; D014805:Vitamin B 12 / Q000737:chemistry*
chemical_list: D006710:Homocysteine; D003035:Cobalt; D002244:Carbon; D013766:5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase; D014805:Vitamin B 12