title: Bacterial diversity in paclobutrazol applied agricultural soils.
abstract: The aim of this study was to investigate the bacterial communities on paclobutrazol [(2RS, 3RS)-1-(4-Chlorophenyl)-4, 4-dimethyl-2-(1H-1,2,4-triazol-1-yl) pentan-3-ol]-applied agricultural soils by denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction (PCR) amplified 16S rDNA gene fragments. Three different agricultural soil samples were collected from paclobutrazol applied mango and waxapple orchards, peanut fields and untreated rice fields as a control for DGGE analysis. The DGGE pattern of PCR- generated 16S rDNA gene fragments indicated that the bacterial populations from four paclobutrazol-applied soils of peanut fields were closely related to each other and two paclobutrazol-applied soils of mango and waxapple orchards harbored closely related bacterial communities. But, paclobutrazol-free agricultural soils comprised relatively a different bacterial group. However, the bacterial populations of mango and waxapple orchard are completely different from the bacterial communities of peanut field. Further purification and sequence analysis of 40 DGGE bands followed by phylogenetic tree assay showed similar results that soil bacteria from paclobutrazol applied mango and waxapple orchard are phylogenetically related. Based on the phylogenetic analysis, the clone M-4 was clad 100 % (bootstrap value) with Mycobacterium sp. The Mycobacterium sp. has been proved to degrade the phenolic compounds such as phenol, 4-chlorphenol, 2,4-dichlorophenol and paclobutrazol molecule containing chlorobenzene ring.
authors.affiliation: Department of Bioresources, DaYeh University, Chang-Hua, Taiwan, ROC.
authors.forename: Chorng-Horng
authors.initials: CH
authors.lastname: Lin
authors.forename: Jimmy
authors.initials: J
authors.lastname: Kuo
authors.forename: Yen-Wen
authors.initials: YW
authors.lastname: Wang
authors.forename: Michael
authors.initials: M
authors.lastname: Chen
authors.forename: Chin-Ho
authors.initials: CH
authors.lastname: Lin
mesh_terms: D001419:Bacteria / Q000145:classification / Q000187:drug effects* / Q000235:genetics / Q000302:isolation & purification*; D044822:Biodiversity; D004269:DNA, Bacterial / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D008969:Molecular Sequence Data; D010802:Phylogeny; D010937:Plant Growth Regulators / Q000494:pharmacology*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012988:Soil Microbiology; D014230:Triazoles / Q000494:pharmacology*
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D010937:Plant Growth Regulators; D012336:RNA, Ribosomal, 16S; D014230:Triazoles; C053370:paclobutrazol