title: PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids.
abstract: CONCLUSIONS
  PubDNA Finder is an online repository that we have created to link PubMed Central manuscripts to the sequences of nucleic acids appearing in them. It extends the search capabilities provided by PubMed Central by enabling researchers to perform advanced searches involving sequences of nucleic acids. This includes, among other features (i) searching for papers mentioning one or more specific sequences of nucleic acids and (ii) retrieving the genetic sequences appearing in different articles. These additional query capabilities are provided by a searchable index that we created by using the full text of the 176 672 papers available at PubMed Central at the time of writing and the sequences of nucleic acids appearing in them. To automatically extract the genetic sequences occurring in each paper, we used an original method we have developed. The database is updated monthly by automatically connecting to the PubMed Central FTP site to retrieve and index new manuscripts. Users can query the database via the web interface provided.
  
  
  BACKGROUND
  PubDNA Finder can be freely accessed at http://servet.dia.fi.upm.es:8080/pubdnafinder
authors.affiliation: Departamento de Inteligencia Artificial, Facultad de Informática, Universidad Politécnica de Madrid, Campus de Montegacedo S/N, Boadilla del Monte, Madrid, Spain. mgarcia@infomed.dia.fi.upm.es
authors.forename: Miguel
authors.initials: M
authors.lastname: García-Remesal
authors.forename: Alejandro
authors.initials: A
authors.lastname: Cuevas
authors.forename: David
authors.initials: D
authors.lastname: Pérez-Rey
authors.forename: Luis
authors.initials: L
authors.lastname: Martín
authors.forename: Alberto
authors.initials: A
authors.lastname: Anguita
authors.forename: Diana
authors.initials: D
authors.lastname: de la Iglesia
authors.forename: Guillermo
authors.initials: G
authors.lastname: de la Calle
authors.forename: José
authors.initials: J
authors.lastname: Crespo
authors.forename: Víctor
authors.initials: V
authors.lastname: Maojo
mesh_terms: D001483:Base Sequence; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020407:Internet; D009696:Nucleic Acids / Q000737:chemistry*; D039781:PubMed; D012984:Software
chemical_list: D009696:Nucleic Acids