title: Hybridization-displaced charges for amino-acids: a new model using two point charges per atom along with bond-center charges.
abstract: A new charge distribution is proposed for the amino acids where each atom is associated with two point charges while each bond center is associated with one point charge. Centroids of charges arising due to atomic orbital hybridization called hybridization-displaced charges (HDC) and those located at the atomic sites and bond centers obtained by a modified form of the Mulliken scheme were combined. The density matrix calculations required for this analysis were performed at the B3LYP/6-31G** level of density functional theory. The combination of HDC centroids with the modified Mulliken charges was found to yield dipole moments and surface molecular electrostatic potentials (MEP) of the amino acids in good agreement with those obtained by rigorous DFT calculations or those obtained using the MEP-fitted CHelpG charges. This study shows that the combination of HDC centroids with the modified Mulliken charges is significantly superior to the conventional Mulliken charges.
authors.affiliation: Department of Physics, Banaras Hindu University, Varanasi, India.
authors.forename: Neha
authors.initials: N
authors.lastname: Agnihotri
authors.forename: P C
authors.initials: PC
authors.lastname: Mishra
mesh_terms: D000465:Algorithms; D000596:Amino Acids / Q000737:chemistry*; D003198:Computer Simulation; D004563:Electrochemistry; D004583:Electrons; D008958:Models, Molecular; D008968:Molecular Conformation; D013499:Surface Properties
chemical_list: D000596:Amino Acids