title: Marine prasinovirus genomes show low evolutionary divergence and acquisition of protein metabolism genes by horizontal gene transfer.
abstract: Although marine picophytoplankton are at the base of the global food chain, accounting for half of the planetary primary production, they are outnumbered 10 to 1 and are largely controlled by hugely diverse populations of viruses. Eukaryotic microalgae form a ubiquitous and particularly dynamic fraction of such plankton, with environmental clone libraries from coastal regions sometimes being dominated by one or more of the three genera Bathycoccus, Micromonas, and Ostreococcus (class Prasinophyceae). The complete sequences of two double-stranded (dsDNA) Bathycoccus, one dsDNA Micromonas, and one new dsDNA Ostreococcus virus genomes are described. Genome comparison of these giant viruses revealed a high degree of conservation, both for orthologous genes and for synteny, except for one 36-kb inversion in the Ostreococcus lucimarinus virus and two very large predicted proteins in Bathycoccus prasinos viruses. These viruses encode a gene repertoire of certain amino acid biosynthesis pathways never previously observed in viruses that are likely to have been acquired from lateral gene transfer from their host or from bacteria. Pairwise comparisons of whole genomes using all coding sequences with homologous counterparts, either between viruses or between their corresponding hosts, revealed that the evolutionary divergences between viruses are lower than those between their hosts, suggesting either multiple recent host transfers or lower viral evolution rates.
authors.affiliation: UPMC Université de Paris 06, FRE 3355, Observatoire Océanologique, Avenue du Fontaulé, BP44, 66651 Banyuls-sur-Mer, France. h.moreau@obs-banyuls.fr
authors.forename: Hervé
authors.initials: H
authors.lastname: Moreau
authors.forename: Gwenael
authors.initials: G
authors.lastname: Piganeau
authors.forename: Yves
authors.initials: Y
authors.lastname: Desdevises
authors.forename: Richard
authors.initials: R
authors.lastname: Cooke
authors.forename: Evelyne
authors.initials: E
authors.lastname: Derelle
authors.forename: Nigel
authors.initials: N
authors.lastname: Grimsley
mesh_terms: D005075:Biological Evolution; D004266:DNA Virus Infections / Q000235:genetics* / Q000821:virology; D004267:DNA Viruses / Q000235:genetics* / Q000472:pathogenicity*; D004279:DNA, Viral / Q000502:physiology; D022761:Gene Transfer, Horizontal; D005814:Genes, Viral / Q000502:physiology; D014644:Genetic Variation; D016679:Genome, Viral; D008386:Marine Biology; D058086:Microalgae / Q000821:virology*; D010802:Phylogeny
chemical_list: D004279:DNA, Viral