Structural and atoms-in-molecules analysis of hydrogen-bond network around nitroxides in liquid water.
In this study, we investigated the hydrogen-bond network patterns involving the NO moieties of five small nitroxides in liquid water by analyzing nanosecond scale molecular dynamics trajectories. To this end, we implemented two types of hydrogen-bond definitions, based on electronic structure, using Bader's atoms-in-molecules analysis and based on geometric criteria. In each definition framework, the nitroxide/water hydrogen-bond networks appear very variable from a nitroxide to another. Moreover, each definition clearly leads to a different picture of nitroxide hydration. For instance, the electronic structure-based definition predicts a number of hydrogen bonds around the nitroxide NO moiety usually larger than geometric structure-based ones. One particularly interesting result is that the strength of a nitroxide/water hydrogen bond does not depend on its linearity, leading us to question the relevance of geometric definition based on angular cutoffs to study this type of hydrogen bond. Moreover, none of the hydrogen-bond definitions we consider in the present study is able to quantitatively correlate the strength of nitroxide/water hydrogen-bond networks with the aqueous nitroxide spin properties. This clearly exhibits that the hydrogen-bonding concept is not reliable enough to draw quantitative conclusions concerning such properties.
Houriez
Céline
C
UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérôme, Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France. celine.houriez@univ-provence.fr
Masella
Michel
M
Ferré
Nicolas
N
D006860:Hydrogen Bonding; D056004:Molecular Dynamics Simulation; D015394:Molecular Structure; D009589:Nitrogen Oxides / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
D009589:Nitrogen Oxides; D014867:Water