Applications of Little's Law to stochastic models of gene expression.
The intrinsic stochasticity of gene expression can lead to large variations in protein levels across a population of cells. To explain this variability, different sources of messenger RNA (mRNA) fluctuations ("Poisson" and "telegraph" processes) have been proposed in stochastic models of gene expression. Both Poisson and telegraph scenario models explain experimental observations of noise in protein levels in terms of "bursts" of protein expression. Correspondingly, there is considerable interest in establishing relations between burst and steady-state protein distributions for general stochastic models of gene expression. In this work, we address this issue by considering a mapping between stochastic models of gene expression and problems of interest in queueing theory. By applying a general theorem from queueing theory, Little's Law, we derive exact relations which connect burst and steady-state distribution means for models with arbitrary waiting-time distributions for arrival and degradation of mRNAs and proteins. The derived relations have implications for approaches to quantify the degree of transcriptional bursting and hence to discriminate between different sources of intrinsic noise in gene expression. To illustrate this, we consider a model for regulation of protein expression bursts by small RNAs. For a broad range of parameters, we derive analytical expressions (validated by stochastic simulations) for the mean protein levels as the levels of regulatory small RNAs are varied. The results obtained show that the degree of transcriptional bursting can, in principle, be determined from changes in mean steady-state protein levels for general stochastic models of gene expression.
Elgart
Vlad
V
Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, 24060, USA. velgart@stanford.edu
Jia
Tao
T
Kulkarni
Rahul V
RV
D003198:Computer Simulation; D005786:Gene Expression Regulation / Q000502:physiology*; D008954:Models, Biological; D015233:Models, Statistical; D020543:Proteome / Q000378:metabolism*; D012333:RNA, Messenger / Q000502:physiology*; D013269:Stochastic Processes
D020543:Proteome; D012333:RNA, Messenger