BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.
BACKGROUND
BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors.


BACKGROUND
BUCKy is open source and distributed under the GNU general public license at www.stat.wisc.edu/∼ane/bucky/.
Larget
Bret R
BR
Department of Statistics, University of Wisconsin-Madison, WI 53706, USA.
Kotha
Satish K
SK
Dewey
Colin N
CN
Ané
Cécile
C
D001499:Bayes Theorem; D019295:Computational Biology / Q000379:methods*; D005796:Genes; D010802:Phylogeny; D012984:Software