title: SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.
abstract: CONCLUSIONS
  SimiCon is a web server designed for an automated identification of equivalent protein-ligand atomic contacts in different conformational models of a complex. The contacts are computed with internal coordinate mechanics (ICM) software with respect to molecular symmetry and the results are shown in the browser as text, tables and interactive 3D graphics. The web server can be executed remotely without a browser to allow users to automate multiple calculations.
  
  
  BACKGROUND
  SimiCon is freely available at http://abagyan.ucsd.edu/SimiCon
authors.affiliation: UCSD Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California-San Diego, La Jolla, CA 92093, USA.
authors.forename: Manuel
authors.initials: M
authors.lastname: Rueda
authors.forename: Vsevolod
authors.initials: V
authors.lastname: Katritch
authors.forename: Eugene
authors.initials: E
authors.lastname: Raush
authors.forename: Ruben
authors.initials: R
authors.lastname: Abagyan
mesh_terms: D003196:Computer Graphics; D030562:Databases, Protein; D020407:Internet; D008024:Ligands; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D012984:Software
chemical_list: D008024:Ligands; D011506:Proteins