title: BP1, an isoform of DLX4 homeoprotein, negatively regulates BRCA1 in sporadic breast cancer.
abstract: BACKGROUND
  Several lines of evidence point to an important role for BP1, an isoform of DLX4 homeobox gene, in breast carcinogenesis and progression. BRCA1 is a well-known player in the etiology of breast cancer. While familial breast cancer is often marked by BRCA1 mutation and subsequent loss of heterozygosity, sporadic breast cancers exhibit reduced expression of wild type BRCA1, and loss of BRCA1 expression may result in tumor development and progression.
  
  
  METHODS
  The Cister algorithm and Genomatix program were used to identify potential BP1 binding sites in BRCA1 gene. Real-time PCR, Western blot and immunohistochemistry analysis were performed to verify the expression of BRCA1 and BP1 in cell lines and breast cancer tissues. Double-stranded siRNA transfection was carried out for silencing BP1 expression. ChIP and EMSA were used to confirm that BP1 specifically binds to BRCA1.
  
  
  RESULTS
  A putative BP1 binding site was identified in the first intron of BRCA1, which was confirmed by chromatin immunoprecipiation and electrophoresis mobility shift assay. BP1 and BRCA1 expression were inversely correlated in breast cancer cell lines and tissues, suggesting that BP1 may suppress BRCA1 transcription through consensus sequence binding.
  
  
  CONCLUSIONS
  BP1 homeoprotein represses BRCA1 expression through direct binding to its first intron, which is consistent with a previous study which identified a novel transcriptional repressor element located more than 500 base pairs into the first intron of BRCA1, suggesting that the first intron plays an important role in the negative regulation of BRCA1. Although further functional studies are necessary to confirm its repressor activity towards BRCA1, the elucidation of the role of BP1 in breast tumorigenesis holds great promise in establishing BP1 as a novel target for drug therapy.
authors.affiliation: Department of Medicine, Division of Genomic Medicine, George Washington University Medical Center, Washington, DC, USA.
authors.forename: Brian J
authors.initials: BJ
authors.lastname: Kluk
authors.forename: Yebo
authors.initials: Y
authors.lastname: Fu
authors.forename: Trina A
authors.initials: TA
authors.lastname: Formolo
authors.forename: Lei
authors.initials: L
authors.lastname: Zhang
authors.forename: Anne K
authors.initials: AK
authors.lastname: Hindle
authors.forename: Yan-gao
authors.initials: YG
authors.lastname: Man
authors.forename: Robert S
authors.initials: RS
authors.lastname: Siegel
authors.forename: Patricia E
authors.initials: PE
authors.lastname: Berg
authors.forename: Chuxia
authors.initials: C
authors.lastname: Deng
authors.forename: Timothy A
authors.initials: TA
authors.lastname: McCaffrey
authors.forename: Sidney W
authors.initials: SW
authors.lastname: Fu
mesh_terms: D001665:Binding Sites; D001943:Breast Neoplasms / Q000235:genetics* / Q000378:metabolism; D045744:Cell Line, Tumor; D047369:Chromatin Immunoprecipitation; D016384:Consensus Sequence; D024202:Electrophoretic Mobility Shift Assay; D005260:Female; D015972:Gene Expression Regulation, Neoplastic; D019398:Genes, BRCA1; D018398:Homeodomain Proteins / Q000235:genetics / Q000378:metabolism / Q000502:physiology*; D006801:Humans; D020033:Protein Isoforms / Q000235:genetics; D034622:RNA Interference; D012097:Repressor Proteins / Q000235:genetics / Q000378:metabolism / Q000502:physiology*; D017422:Sequence Analysis, DNA; D014157:Transcription Factors / Q000235:genetics / Q000378:metabolism / Q000502:physiology*
chemical_list: C105304:DLX4 protein, human; D018398:Homeodomain Proteins; D020033:Protein Isoforms; D012097:Repressor Proteins; D014157:Transcription Factors