title: Emergence of the new variant of Chlamydia trachomatis in a defined area of Sweden before 2002?
abstract: OBJECTIVE
  To compare the proportions of Chlamydia trachomatis-positive specimens detected by Cobas Amplicor CT/NG (CA PCR) with C trachomatis positives in cell culture from 1999 to 2006 in order to estimate when the new variant of C trachomatis (nvCT) with a deletion in the cryptic plasmid (in the target region for CA PCR that resulted in false-negative results) emerged in Örebro County, Sweden.
  
  
  METHODS
  The annual number of specimens analysed using CA PCR in 1999-2006 ranged from 5077 to 11,622 and using cell culture (McCoy cells) from 5201 to 7425. Logistic regression was applied to evaluate the change in the proportion of C trachomatis-positive tests over the years between the two methods. The statistical interaction effect of year and method was estimated using both unadjusted and adjusted (age, gender and clinic) models.
  
  
  RESULTS
  From 2002, the proportion of C trachomatis-positive specimens identified using CA PCR decreased annually, whereas the proportion of culture-positive specimens increased annually. Logistic regression showed a statistically significant interaction effect between periods (1999-2006) and groups of specimens analysed using CA PCR or cell culture. A statistically significant association between the interaction of CA PCR/cell culture and period was observed in the unadjusted and adjusted models.
  
  
  CONCLUSIONS
  This study indicates that in Orebro County, Sweden, nvCT was already present before 2002, that is, when the difference between the proportions of C trachomatis-positive specimens identified by CA PCR compared with cell culture-positive specimens began to show a statistically significant decline.
authors.affiliation: Clinical Research Centre, Orebro University Hospital, Orebro, Sweden. margareta.jurstrand@orebroll.se
authors.forename: Margaretha
authors.initials: M
authors.lastname: Jurstrand
authors.forename: Per
authors.initials: P
authors.lastname: Olcén
authors.forename: Anders
authors.initials: A
authors.lastname: Magnuson
authors.forename: Lena
authors.initials: L
authors.lastname: Jakobsson
authors.forename: Hans
authors.initials: H
authors.lastname: Fredlund
authors.forename: Magnus
authors.initials: M
authors.lastname: Unemo
mesh_terms: D000293:Adolescent; D000328:Adult; D000368:Aged; D018929:Cell Culture Techniques; D002648:Child; D002675:Child, Preschool; D002690:Chlamydia Infections / Q000175:diagnosis / Q000453:epidemiology* / Q000382:microbiology; D002692:Chlamydia trachomatis / Q000145:classification* / Q000302:isolation & purification; D021821:Communicable Diseases, Emerging / Q000175:diagnosis / Q000453:epidemiology* / Q000382:microbiology; D005260:Female; D006801:Humans; D007223:Infant; D008297:Male; D008875:Middle Aged; D016133:Polymerase Chain Reaction; D013548:Sweden / Q000453:epidemiology; D013997:Time Factors