Vertical detachment energies of anionic thymidine: Microhydration effects.
Density functional theory has been employed to investigate microhydration effects on the vertical detachment energy (VDE) of the thymidine anion by considering the various structures of its monohydrates. Structures were located using a random searching procedure. Among 14 distinct structures of the anionic thymidine monohydrate, the low-energy structures, in general, have the water molecule bound to the thymine base unit. The negative charge developed on the thymine moiety increases the strength of the intermolecular hydrogen bonding between the water and base units. The computed VDE values of the thymidine monohydrate anions are predicted to range from 0.67 to 1.60 eV and the lowest-energy structure has a VDE of 1.32 eV. The VDEs of the monohydrates of the thymidine anion, where the N(1)[Single Bond]H hydrogen of thymine has been replaced by a 2(')-deoxyribose ring, are greater by ∼0.30 eV, compared to those of the monohydrates of the thymine anion. The results of the present study are in excellent agreement with the accompanying experimental results of Bowen and co-workers [J. Chem. Phys. 133, 144304 (2010)].
Kim
Sunghwan
S
Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA.
Schaefer
Henry F
HF
D000838:Anions / Q000737:chemistry*; D006860:Hydrogen Bonding; D013936:Thymidine / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
D000838:Anions; D014867:Water; D013936:Thymidine