SmashCommunity: a metagenomic annotation and analysis tool.
CONCLUSIONS
SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.


BACKGROUND
SmashCommunity source code and documentation are available at http://www.bork.embl.de/software/smash


BACKGROUND
bork@embl.de


BACKGROUND
Supplementary data are available at Bioinformatics online.
Arumugam
Manimozhiyan
M
EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
Harrington
Eoghan D
ED
Foerstner
Konrad U
KU
Raes
Jeroen
J
Bork
Peer
P
D005796:Genes; D056186:Metagenomics / Q000379:methods*; D058977:Molecular Sequence Annotation; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D012984:Software