Structure-based insights into the catalytic power and conformational dexterity of peroxiredoxins.
Peroxiredoxins (Prxs), some of nature's dominant peroxidases, use a conserved Cys residue to reduce peroxides. They are highly expressed in organisms from all kingdoms, and in eukaryotes they participate in hydrogen peroxide signaling. Seventy-two Prx structures have been determined that cover much of the diversity of the family. We review here the current knowledge and show that Prxs can be effectively classified by a structural/evolutionary organization into six subfamilies followed by specification of a 1-Cys or 2-Cys mechanism, and for 2-Cys Prxs, the structural location of the resolving Cys. We visualize the varied catalytic structural transitions and highlight how they differ depending on the location of the resolving Cys. We also review new insights into the question of how Prxs are such effective catalysts: the enzyme activates not only the conserved Cys thiolate but also the peroxide substrate. Moreover, the hydrogen-bonding network created by the four residues conserved in all Prx active sites stabilizes the transition state of the peroxidatic S(N)2 displacement reaction. Strict conservation of the peroxidatic active site along with the variation in structural transitions provides a fascinating picture of how the diverse Prxs function to break down peroxide substrates rapidly.
Hall
Andrea
A
Department of Biochemistry & Biophysics, Oregon State University, Corvallis, Oregon 97331, USA.
Nelson
Kimberly
K
Poole
Leslie B
LB
Karplus
P Andrew
PA
D000595:Amino Acid Sequence; D002384:Catalysis; D020134:Catalytic Domain; D003545:Cysteine / Q000737:chemistry* / Q000378:metabolism*; D004220:Disulfides / Q000737:chemistry; D019143:Evolution, Molecular; D006861:Hydrogen Peroxide / Q000737:chemistry / Q000378:metabolism; D007700:Kinetics; D008969:Molecular Sequence Data; D010545:Peroxides / Q000737:chemistry; D054464:Peroxiredoxins / Q000737:chemistry* / Q000145:classification*; D017510:Protein Folding; D020836:Protein Structure, Quaternary; D017433:Protein Structure, Secondary
D004220:Disulfides; D010545:Peroxides; D006861:Hydrogen Peroxide; D054464:Peroxiredoxins; D003545:Cysteine