Binding thermodynamics of phosphorylated inhibitors to triosephosphate isomerase and the contribution of electrostatic interactions.
Electrostatic interactions have a central role in some biological processes, such as recognition of charged ligands by proteins. We characterized the binding energetics of yeast triosephosphate isomerase (TIM) with phosphorylated inhibitors 2-phosphoglycollate (2PG) and phosphoglycolohydroxamate (PGH). We determined the thermodynamic parameters of the binding process (K(b), ΔG(b), ΔH(b), ΔS(b) and ΔC(p)) with different concentrations of NaCl, using fluorimetric and calorimetric titrations in the conventional mode of ITC and a novel method, multithermal titration calorimetry (MTC), which enabled us to measure ΔC(p) in a single experiment. We ruled out specific interactions of Na(+) and Cl(-) with the native enzyme and did not detect significant linked protonation effects upon the binding of inhibitors. Increasing ionic strength (I) caused K(b), ΔG(b) and ΔH(b) to become less favorable, while ΔS(b) became less unfavorable. From the variation of K(b) with I, we determined the electrostatic contribution of TIM-2PG and TIM-PGH to ΔG(b) at I=0.06 M and 25 °C to be 36% and 26%, respectively. The greater affinity of PGH for TIM is due to a more favorable ΔH(b) compared to 2PG (by 19-24 kJ mol(-1) at 25 °C). This difference is compatible with PGH establishing up to five more hydrogen bonds with TIM. Both binding ΔC(p)s were negative, and less negative with increasing ionic strength. ΔC(p)s at I=0.06 M were much more negative than predicted by surface area models. Water molecules trapped in the interface when ligands bind to protein could explain the highly negative ΔCps. Thermodynamic binding functions for TIM-2PG changed more with ionic strength than those for TIM-PGH. This greater dependence is consistent with linked, but compensated, protonation equilibriums yielding the dianionic species of 2PG that binds to TIM, process that is not required for PGH.
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Iris N
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Departamento de Química, Universidad Autónoma Metropolitana -Iztapalapa, México D.F., México.
Pérez-Hernández
Gerardo
G
Garza-Ramos
Georgina
G
Hernández-Arana
Andrés
A
González-Mondragón
Edith
E
Zubillaga
Rafael A
RA
D002151:Calorimetry; D002942:Circular Dichroism; D004791:Enzyme Inhibitors / Q000378:metabolism*; D005470:Fluorometry; D006016:Glycolates / Q000378:metabolism*; D006877:Hydroxamic Acids / Q000378:metabolism*; D007700:Kinetics; D011485:Protein Binding; D012441:Saccharomyces cerevisiae / Q000201:enzymology; D029701:Saccharomyces cerevisiae Proteins / Q000378:metabolism*; D012965:Sodium Chloride / Q000378:metabolism; D055672:Static Electricity; D013816:Thermodynamics; D014305:Triose-Phosphate Isomerase / Q000378:metabolism*
D004791:Enzyme Inhibitors; D006016:Glycolates; D006877:Hydroxamic Acids; D029701:Saccharomyces cerevisiae Proteins; D012965:Sodium Chloride; C008886:phosphoglycolohydroxamate; D014305:Triose-Phosphate Isomerase; C013193:phosphoglycolate