EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.).
Peanut (Arachis hypogaea L.) is one of the most important oil crops in the world. However, biotechnological based improvement of peanut is far behind many other crops. It is critical and urgent to establish the biotechnological platform for peanut germplasm innovation. In this study, a peanut seed cDNA library was constructed to establish the biotechnological platform for peanut germplasm innovation. About 17,000 expressed sequence tags (ESTs) were sequenced and used for further investigation. Among which, 12.5% were annotated as metabolic related and 4.6% encoded transcription or post-transcription factors. ESTs encoding storage protein and enzymes related to protein degradation accounted for 28.8% and formed the largest group of the annotated ESTs. ESTs that encoded stress responsive proteins and pathogen-related proteins accounted for 5.6%. ESTs that encoded unknown proteins or showed no hit in the GenBank nr database accounted for 20.1% and 13.9%, respectively. A total number of 5066 EST sequences were selected to make a cDNA microarray. Expression analysis revealed that these sequences showed diverse expression patterns in peanut seeds, leaves, stems, roots, flowers, and gynophores. We also analyzed the gene expression pattern during seed development. Genes that were upregulated (≥twofold) at 15, 25, 35, and 45 days after pegging (DAP) were found and compared with 70 DAP. The potential value of these genes and their promoters in the peanut gene engineering study is discussed.
Bi
Yu-Ping
YP
High-Tech Research Center, Shandong Academy of Agricultural Sciences, Shandong, People's Republic of China.
Liu
Wei
W
Xia
Han
H
Su
Lei
L
Zhao
Chuan-Zhi
CZ
Wan
Shu-Bo
SB
Wang
Xing-Jun
XJ
D010367:Arachis / Q000235:genetics* / Q000254:growth & development; D003001:Cloning, Molecular; D018556:Crops, Agricultural / Q000235:genetics; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling / Q000379:methods*; D018507:Gene Expression Regulation, Developmental; D015723:Gene Library; D017343:Genes, Plant; D020411:Oligonucleotide Array Sequence Analysis; D012639:Seeds / Q000235:genetics / Q000254:growth & development / Q000378:metabolism; D017422:Sequence Analysis, DNA / Q000379:methods