Flapjack--graphical genotype visualization.
CONCLUSIONS
New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.


BACKGROUND
Flapjack is freely available for Microsoft Windows, Mac OS X, Linux and Solaris, and can be downloaded from http://bioinf.scri.ac.uk/flapjack .
Milne
Iain
I
Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee, UK.
Shaw
Paul
P
Stephen
Gordon
G
Bayer
Micha
M
Cardle
Linda
L
Thomas
William T B
WT
Flavell
Andrew J
AJ
Marshall
David
D
D002874:Chromosome Mapping; D003196:Computer Graphics; D005838:Genotype; D020641:Polymorphism, Single Nucleotide; D040641:Quantitative Trait Loci; D012984:Software