Clustering tendency in the protein fold space.
Several non-redundant ensembles of protein three-dimensional structures were analyzed in order to estimate their natural clustering tendency by means of the Cox-Lewis coefficient. It was observed that, despite proteins tend to aggregate into different and well separated groups, some overlap between different clusters occurs. This suggests that classifications bases only on structural data cannot allow a systematic classification of proteins. Additional information are in particular needed in order to monitor completely the complex evolutionary relationships between proteins.
Carugo
Oliviero
O
Department of General Chemistry, Pavia University, viale Taramelli 12, I-27100 Pavia, Italy and Department of Biomolecular Structural Chemistry, MFPL - Vienna University, Campus Vienna Biocenter 5, A-1030 Vienna, Austria. oliviero.carugo@univie.ac.at