Enabling GeneHunter as a grid service: a case study for implementing analytical services in biomedical grids.
BACKGROUND
A cursory analysis of the biomedical grid literature shows that most projects emphasize data sharing and the development of new applications for the grid environment. Much less is known about the best practices for the migration of existing analytical tools into the grid environment.


OBJECTIVE
To make GeneHunter available as a grid service and to evaluate the effort and best practices needed to enable a legacy application as a grid service when addressing semantic integration and using the caBIG tools.


METHODS
We used the tools available in the caBIG environment because these tools are quite general and they may be used to deploy services in similar biomedical grids that are OGSA-compliant.


RESULTS
We achieved semantic integration of GeneHunter within the caBIG by creating a new UML model, LinkageX, for the LINKAGE data format. The LinkageX UML model has been published in the caDSR and it is publically available for usage with GeneHunter or any other program using this data format.


CONCLUSIONS
While achieving semantic interoperability is still a time-consuming task, the tools available in caBIG can greatly enhance productivity and decrease errors.
Department of Biomedical Informatics, The University of Utah, 26 South 2000 East, Room 5775 HSEB, Salt Lake City, Utah 84108, USA.
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S
Krikov
R C
RC
Price
S A
SA
Matney
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Allen-Brady
J C
JC
Facelli
D000465:Algorithms; D003198:Computer Simulation; D003628:Database Management Systems; D004526:Efficiency; D004812:Epidemiologic Methods; D005240:Feasibility Studies; D005823:Genetics; D006801:Humans; D033181:Information Dissemination / Q000379:methods*; D008490:Medical Informatics / Q000458:organization & administration*; D014584:User-Computer Interface