One residue substitution in PcyA leads to unexpected changes in tetrapyrrole substrate binding.
Phycocyanobilin:ferredoxin oxidoreductase (PcyA) catalyzes the sequential reduction of the vinyl group of the D-ring and A-ring of biliverdin IXα (BV), using reducing equivalents provided by ferredoxin. This reaction produces phycocyanobilin, a pigment used for light-harvesting and light-sensing in red algae and cyanobacteria. The crystal structure of PcyA-BV reveals that BV is specifically bound in the PcyA active pocket through extensive hydrophobic and hydrophilic interactions. During the course of a mutational study of PcyA, we observed that mutation of the V225 position, apart from the processing sites, conferred an unusual property on PcyA; V225D mutant protein could bind BV and its analog BV13, but these complexes showed a distinct UV-vis absorption spectrum from that of the wild-type PcyA-BV complex. The crystal structures of BV- and BV13-bound forms of V225D protein revealed that gross structural changes occurred near the substrate-binding pocket, and that the BV/BV13 binding manner in the pocket was dramatically altered. Protein folding in V225D-BV/BV13 was more similar to that of substrate-free PcyA than that in PcyA-BV; the "induced-fit" did not occur when BV/BV13 was bound to the V225D protein. The unexpected structural change presented here provides a cautionary note about interpreting functional data derived from a mutated protein in the absence of its exact structure.
Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan.
Kei
K
Wada
Yoshinori
Y
Hagiwara
Yuko
Y
Yutani
Keiichi
K
Fukuyama
D019943:Amino Acid Substitution; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics; D001664:Biliverdine / Q000737:chemistry; D018360:Crystallography, X-Ray; D009154:Mutation; D010088:Oxidoreductases / Q000737:chemistry* / Q000235:genetics; D011487:Protein Conformation; D013379:Substrate Specificity / Q000235:genetics; D046939:Synechocystis / Q000201:enzymology*; D045725:Tetrapyrroles / Q000737:chemistry*
D001426:Bacterial Proteins; D045725:Tetrapyrroles; D010088:Oxidoreductases; C442236:phycocyanobilin ferredoxin oxidoreductase, Synechocystis; D001664:Biliverdine