IView: introgression library visualization and query tool.
BACKGROUND
An introgression library is a family of near-isogenic lines in a common genetic background, each of which carries one or more genomic regions contributed by a donor genome. Near-isogenic lines are powerful genetic resources for the analysis of phenotypic variation and are important for map-base cloning genes underlying mutations and traits. With many thousands of distinct genotypes, querying introgression libraries for lines of interest is an issue.


RESULTS
We have created IView, a tool to graphically display and query near-isogenic line libraries for specific introgressions. This tool incorporates a web interface for displaying the location and extent of introgressions. Each genetic marker is associated with a position on a reference map. Users can search for introgressions using marker names, or chromosome number and map positions. This search results in a display of lines carrying an introgression at the specified position. Upon selecting one of the lines, color-coded introgressions on all chromosomes of the line are displayed graphically.The source code for IView can be downloaded from http://xrl.us/iview.


CONCLUSIONS
IView will be useful for those wanting to make introgression data from their stock of germplasm searchable.
Bottoms
Christopher A
CA
Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
Flint-Garcia
Sherry
S
McMullen
Michael D
MD
D005819:Genetic Markers / Q000235:genetics; D015698:Genomic Library; D023281:Genomics / Q000379:methods*; D005838:Genotype; D010641:Phenotype; D040641:Quantitative Trait Loci; D012984:Software; D014584:User-Computer Interface
D005819:Genetic Markers