Improving the inter-corpora compatibility for protein annotations.
Although there are several corpora with protein annotation, incompatibility between the annotations in different corpora remains a problem that hinders the progress of automatic recognition of protein names in biomedical literature. Here, we report on our efforts to find a solution to the incompatibility issue, and to improve the compatibility between two representative protein-annotated corpora: the GENIA corpus and the GENETAG corpus. In a comparative study, we improve our insight into the two corpora, and a series of experimental results show that most of the incompatibility can be removed.
Wang
Yue
Y
Department of Computer Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan. wangyue@is.s.u-tokyo.ac.jp
Kim
Jin-Dong
JD
Saetre
Rune
R
Pyysalo
Sampo
S
Ohta
Tomoko
T
Tsujii
Jun'ichi
J
D019295:Computational Biology; D057225:Data Mining; D011506:Proteins; D039781:PubMed; D009626:Terminology as Topic
D011506:Proteins