Comparative genomic analysis reveals the evolutionary conservation of Pax gene family.
The Pax gene family encodes a group of transcription factors whose evolution has accompanied the major morphological and functional innovations of vertebrate species. The evolutionary conservation throughout diverse lineages of metazoan and the functional importance in development rendered Pax family an ideal system to address the relationship inside Chordata phylum. In the present study, we sequenced and annotated four genomic regions containing Chinese amphioxus (Branchiostoma belcheri) Pax genes, and retrieved homologous sequences from public database. In comparison with vertebrate homologues, the predicted amphioxus Pax proteins display high sequence conservation. Evidences from the molecular phylogenetic studies and gene organization analyses supports cephalochordates have a much closer relationship to vertebrates than that between tunicates and vertebrates, contrasting to urochordate relatives hypothesis proposed by several latest studies. Analysis of phylogenetic topology derived from concatenated subfamily datasets uncovered a potential statistical bias of supermatrix approach. Furthermore, we deduced an evolutionary scenario of Pax gene family. This scenario provided a plausible explanation for the origin and dynamics of the Pax gene members.
Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen, China.
Wei
W
Wang
Jing
J
Zhong
Yi-Quan
YQ
Wang
D000818:Animals; D001483:Base Sequence; D055028:Comparative Genomic Hybridization / Q000379:methods*; D017124:Conserved Sequence; D019143:Evolution, Molecular; D018507:Gene Expression Regulation, Developmental; D023281:Genomics; D008969:Molecular Sequence Data; D005810:Multigene Family; D051761:Paired Box Transcription Factors / Q000235:genetics*; D010802:Phylogeny; D017386:Sequence Homology, Amino Acid; D014714:Vertebrates / Q000235:genetics*
D051761:Paired Box Transcription Factors