A tool for the morphological analysis of mixtures of lipids and water in computer simulations.
When analyzing computer simulations of mixtures of lipids and water, the questions to be answered are often of a morphological nature. They can deal with global properties, like the kind of phase that is adopted or the presence or absence of certain key features like a pore or stalk, or with local properties, like the local curvature present at a particular part of the lipid/water interface. While in principle all of the information relating to the global and local morphological properties of a system can be obtained from the set of atomic coordinates generated by a computer simulation, the extraction of this information is a tedious task that usually involves using a visualization program and performing the analysis by eye. Here we present a tool that employs the technique of morphological image analysis (MIA) to automatically extract the global morphology--as given by Minkowski functionals--from a set of atomic coordinates, and creates an image of the system onto which the local curvatures are mapped as a color code.
Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
Marc
M
Fuhrmans
Siewert-Jan
SJ
Marrink
D000465:Algorithms; D003198:Computer Simulation; D008051:Lipid Bilayers / Q000737:chemistry; D008055:Lipids / Q000737:chemistry*; D008956:Models, Chemical; D010714:Phosphatidylethanolamines / Q000737:chemistry; D012996:Solutions; D014867:Water / Q000737:chemistry*
D008051:Lipid Bilayers; D008055:Lipids; D010714:Phosphatidylethanolamines; D012996:Solutions; D014867:Water