REDIdb: an upgraded bioinformatics resource for organellar RNA editing sites.
RNA editing is a post-transcriptional molecular process whereby the information in a genetic message is modified from that in the corresponding DNA template by means of nucleotide substitutions, insertions and/or deletions. It occurs mostly in organelles by clade-specific diverse and unrelated biochemical mechanisms. RNA editing events have been annotated in primary databases as GenBank and at more sophisticated level in the specialized databases REDIdb, dbRES and EdRNA. At present, REDIdb is the only freely available database that focuses on the organellar RNA editing process and annotates each editing modification in its biological context. Here we present an updated and upgraded release of REDIdb with a web-interface refurbished with graphical and computational facilities that improve RNA editing investigations. Details of the REDIdb features and novelties are illustrated and compared to other RNA editing databases. REDIdb is freely queried at http://biologia.unical.it/py_script/REDIdb/.
Dipartimento di Biochimica e Biologia Molecolare E. Quagliariello, Università di Bari, Bari, Italy. e.picardi@biologia.uniba.it
Ernesto
E
Picardi
Teresa M R
TM
Regina
Daniil
D
Verbitskiy
Axel
A
Brennicke
Carla
C
Quagliariello
D019295:Computational Biology; D003628:Database Management Systems; D015388:Organelles / Q000378:metabolism*; D017393:RNA Editing