Application of partial least squares and radial basis function neural networks in multivariate imaging analysis-quantitative structure activity relationship: study of cyclin dependent kinase 4 inhibitors.
The detailed application of multivariate image analysis (MIA) method for the evaluation of quantitative structure activity relationship (QSAR) of some cyclin dependent kinase 4 inhibitors is demonstrated. MIA is a type of data mining methods that is based on data sets obtained from 2D images. The purpose of this study is to construct a relationship between pixels of images of investigated compounds as independent and their bioactivities as a dependent variable. Partial least square (PLS) and principal components-radial basis function neural networks (PC-RBFNNs) were developed to obtain a statistical explanation of the activity of the molecules. The performance of developed models were tested by several validation methods such as external and internal tests and also criteria recommended by Tropsha and Roy. The resulted PLS model had a high statistical quality (R2 = 0.991 and R2(CV) = 0.993) for predicting the activity of the compounds. Because of high correlation between values of predicted and experimental activities, MIA-QSAR proved to be a highly predictive approach.
Department of Medicinal Chemistry, Faculty of Pharmacy and Pharmaceutical Sciences, Isfahan University of Medical Sciences, Isfahan, Iran.
Lotfollah
L
Saghaie
Mohsen
M
Shahlaei
Armin
A
Madadkar-Sobhani
Afshin
A
Fassihi
D051358:Cyclin-Dependent Kinase 4 / Q000037:antagonists & inhibitors*; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D020128:Inhibitory Concentration 50; D016018:Least-Squares Analysis; D008958:Models, Molecular; D015999:Multivariate Analysis; D016571:Neural Networks, Computer; D025341:Principal Component Analysis; D047428:Protein Kinase Inhibitors / Q000737:chemistry* / Q000494:pharmacology*; D021281:Quantitative Structure-Activity Relationship
D047428:Protein Kinase Inhibitors; D051358:Cyclin-Dependent Kinase 4