title: Atomistic simulations of materials for optical chemical sensors: DFT-D calculations of molecular interactions between gas-phase analyte molecules and simple substrate models.
abstract: The structures of complexes of some small molecules (formaldehyde, acetaldehyde, ammonia, methylamine, methanol, ethanol, acetone, benzene, acetonitrile, ethyl acetate, chloroform, and tetrahydrofuran, considered as possible analytes) with ethylbenzene and silanol (C(6)H(5)C(2)H(5) and SiH(3)OH, considered as models of polystyrene and silica gel substrates) and with acridine (C(13)H(9)N, considered as a model of an indicator dye molecule of the acridine series) and the corresponding interaction energies have been calculated using the DFT-D approximation. The PBE exchange-correlation potential was used in the calculations. The structures of complexes between the analyte and the substrate were determined by optimizing their ground-state geometry using the SVP split-valence double-zeta plus polarization basis set. The complex formation energies were refined by single-point calculations at the calculated equilibrium geometries using the sufficiently large triple-zeta TZVPP basis set. The calculated interaction energies are used to assess the possibility of using dyes of the acridine series adsorbed on a polystyrene or silica substrate for detecting the small molecules listed above.
authors.affiliation: Photochemistry Center, Russian Academy of Sciences, ul. Novatorov 7a, b. 1, Moscow 119421, Russia.
authors.forename: Andrey A
authors.initials: AA
authors.lastname: Safonov
authors.forename: Elena A
authors.initials: EA
authors.lastname: Rykova
authors.forename: Alexander A
authors.initials: AA
authors.lastname: Bagaturyants
authors.forename: Vyacheslav A
authors.initials: VA
authors.lastname: Sazhnikov
authors.forename: Michael V
authors.initials: MV
authors.lastname: Alfimov
mesh_terms: D002625:Chemistry, Organic; D003198:Computer Simulation; D008958:Models, Molecular; D009930:Organic Chemicals / Q000737:chemistry*
chemical_list: D009930:Organic Chemicals