title: Polymer escape from a metastable Kramers potential: path integral hyperdynamics study.
abstract: We study the dynamics of flexible, semiflexible, and self-avoiding polymer chains moving under a Kramers metastable potential. Due to thermal noise, the polymers, initially placed in the metastable well, can cross the potential barrier, but these events are extremely rare if the barrier is much larger than thermal energy. To speed up the slow rate processes in computer simulations, we extend the recently proposed path integral hyperdynamics method to the cases of polymers. We consider the cases where the polymers' radii of gyration are comparable to the distance between the well bottom and the barrier top. We find that, for a flexible polymers, the crossing rate (R) monotonically decreases with chain contour length (L), but with the magnitude much larger than the Kramers rate in the globular limit. For a semiflexible polymer, the crossing rate decreases with L but becomes nearly constant for large L. For a fixed L, the crossing rate becomes maximum at an intermediate bending stiffness. For the self-avoiding chain, the rate is a nonmonotonic function of L, first decreasing with L, and then, above a certain length, increasing with L. These findings can be instrumental for efficient separation of biopolymers.
authors.affiliation: Department of Physics, Pohang University of Science and Technology, Pohang 790-784, South Korea.
authors.forename: Jaeoh
authors.initials: J
authors.lastname: Shin
authors.forename: Timo
authors.initials: T
authors.lastname: Ikonen
authors.forename: Mahendra D
authors.initials: MD
authors.lastname: Khandkar
authors.forename: Tapio
authors.initials: T
authors.lastname: Ala-Nissila
authors.forename: Wokyung
authors.initials: W
authors.lastname: Sung
mesh_terms: D003198:Computer Simulation; D011108:Polymers / Q000737:chemistry*
chemical_list: D011108:Polymers