title: Submitting proteomics data to PRIDE using PRIDE Converter.
abstract: With the continuously growing amount of proteomics data being produced, it has become increasingly important to make these data publicly available so that they can be audited, reanalyzed, and reused. More and more journals are also starting to request the deposition of MS data in publicly available repositories for submitted proteomics manuscripts. In this chapter we focus on one of the most commonly used proteomics data repositories, PRIDE (the PRoteomics IDEntifications database, http://www.ebi.ac.uk/pride), and demonstrate how a new graphical user interface tool called PRIDE Converter (http://pride-converter.googlecode.com) greatly simplifies the submission of data to PRIDE.
authors.affiliation: Department of Informatics, University of Bergen, Bergen, Norway.
authors.forename: Harald
authors.initials: H
authors.lastname: Barsnes
authors.forename: Juan Antonio
authors.initials: JA
authors.lastname: Vizcaíno
authors.forename: Florian
authors.initials: F
authors.lastname: Reisinger
authors.forename: Ingvar
authors.initials: I
authors.lastname: Eidhammer
authors.forename: Lennart
authors.initials: L
authors.lastname: Martens
mesh_terms: D030562:Databases, Protein; D001330:Electronic Data Processing; D006801:Humans; D013058:Mass Spectrometry / Q000295:instrumentation; D040901:Proteomics / Q000379:methods*; D012984:Software