title: Multibody effects in ion binding and selectivity.
abstract: Selective binding of ions to biomolecules plays a vital role in numerous biological processes. To understand the specific role of induced effects in selective ion binding, we use quantum chemical and pairwise-additive force-field simulations to study Na(+) and K(+) binding to various small molecules representative of ion binding functional groups in biomolecules. These studies indicate that electronic polarization significantly contributes to both absolute and relative ion-binding affinities. Furthermore, this contribution depends on both the number and the specific chemistries of the coordinating molecules, thus highlighting the complexity of ion-ligand interactions. Specifically, multibody interactions reduce as well as enhance the dipole moments of the ion-coordinating molecules, thereby affecting observables like coordination number distributions of ions. The differential polarization induced in molecules coordinating these two equivalently charged, but different-sized, ions also depends upon the number of coordinating molecules, showing the importance of multibody effects in distinguishing these ions thermodynamically. Because even small differences in ionic radii (0.4 Å for Na(+) and K(+)) produce differential polarization trends critical to distinguishing ions thermodynamically, it is likely that polarization plays an important role in thermodynamically distinguishing other ions and charged chemical and biological functional groups.
authors.affiliation: Biological and Material Sciences Center, Sandia National Laboratories, Albuquerque, NM, USA. svarma@iit.edu
authors.forename: Sameer
authors.initials: S
authors.lastname: Varma
authors.forename: Susan B
authors.initials: SB
authors.lastname: Rempe
mesh_terms: D004560:Electricity; D005557:Formaldehyde / Q000737:chemistry; D005740:Gases / Q000737:chemistry; D007477:Ions; D011188:Potassium / Q000378:metabolism*; D012964:Sodium / Q000378:metabolism*; D013816:Thermodynamics; D014867:Water / Q000737:chemistry
chemical_list: D005740:Gases; D007477:Ions; D014867:Water; D005557:Formaldehyde; D012964:Sodium; D011188:Potassium