title: Theoretical studies of salt-bridge formation by amino acid side chains in low and medium polarity environments.
abstract: Salt-bridge formation between Asp/Glu···Lys and Asp/Glu···Arg side chains has been studied by model systems including formic and acetic acids as proton donors and methylamine, guanidine, and methylguanidine as proton acceptors. Calculations have been performed up to the CCSD(T)(CBS)//MP2/aug-cc-pvtz level with formic acid proton donors. Complexes formed with acetic acid were studied at the CCSD(T)/aug-cc-pvdz//MP2/aug-cc-pvdz level. Protein environments of low and moderate polarity were mimicked by a continuum solvent with dielectric constants (ε) set to 5 and 15, respectively. Free energy differences, ΔG(tot), were calculated for the neutral, hydrogen-bonded form and for the tautomeric ion pair. These values predict that a salt bridge is not favored for the Asp/Glu···Lys pair, even in an environment with ε as large as 15. In contrast, the Asp/Glu···Arg salt bridge is feasible even in an environment with ε = 5. Charge transfers for the complexes were calculated on the basis of CHELPG and AIM charges.
authors.affiliation: Center for Drug Design and Development, The University of Toledo, Toledo, Ohio 43606-3390, United States. pnagy@utnet.utoledo.edu
authors.forename: Peter I
authors.initials: PI
authors.lastname: Nagy
authors.forename: Paul W
authors.initials: PW
authors.lastname: Erhardt
mesh_terms: D019342:Acetic Acid / Q000737:chemistry; D000465:Algorithms; D000596:Amino Acids / Q000737:chemistry*; D005561:Formates / Q000737:chemistry; D019791:Guanidine / Q000737:chemistry; D057927:Hydrophobic and Hydrophilic Interactions; D008744:Methylamines / Q000737:chemistry; D008962:Models, Theoretical; D015394:Molecular Structure; D011522:Protons
chemical_list: D000596:Amino Acids; D005561:Formates; D008744:Methylamines; D011522:Protons; C030544:formic acid; C027451:methylamine; D019791:Guanidine; D019342:Acetic Acid