title: E-photosynthesis: web-based platform for modeling of complex photosynthetic processes.
abstract: E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.
authors.affiliation: Systems Biology Laboratory, Faculty of Informatics Masaryk University, Botanická 68a, CZ-60200 Brno, Czech Republic.
authors.forename: David
authors.initials: D
authors.lastname: Safránek
authors.forename: Jan
authors.initials: J
authors.lastname: Cervený
authors.forename: Matěj
authors.initials: M
authors.lastname: Klement
authors.forename: Jana
authors.initials: J
authors.lastname: Pospíšilová
authors.forename: Luboš
authors.initials: L
authors.lastname: Brim
authors.forename: Dušan
authors.initials: D
authors.lastname: Lazár
authors.forename: Ladislav
authors.initials: L
authors.lastname: Nedbal
mesh_terms: D019295:Computational Biology / Q000379:methods*; D003198:Computer Simulation; D020407:Internet; D007700:Kinetics; D008954:Models, Biological; D010788:Photosynthesis / Q000502:physiology*; D012984:Software; D049490:Systems Biology / Q000379:methods*