Non-enzymatic transfer of sequence information under plausible prebiotic conditions.
We simulated in our laboratory a prebiotic environment where dry and wet periods were cycled. Under anhydrous conditions, lipid molecules present in the medium could form fluid lamellar matrices and work as organizing agents for the condensation of nucleic acid monomers into polymers. We exposed a mixture of 2'-deoxyribonucleoside 5'-monophosphates and a ssDNA oligomer template to this dry environment at 90 °C under a continuous gentle stream of CO(2) and we followed it with rehydration periods. After five dry/wet cycles we were able to detect the presence of a product that was complementary to the template. The reaction had a 0.5% yield with respect to the template, as measured by staining with the Pico Green(®) fluorescent probe. Absent initial template, the product of the reaction remained below the detection limit. In order to characterize the fidelity of replication, the synthesized strand was ligated to adapters, amplified by PCR, and sequenced. The alignment of the sequenced DNA to the expected complementary sequence revealed that the misincorporation rate was 9.9%. We present these results as a proof of concept for the possibility of having non-enzymatic transfer of sequence information in a prebiotically plausible environment.
Department of Biomolecular Engineering, Baskin School of Engineering, University of California, Santa Cruz, CA 95060, USA. felix.olasagasti@ehu.es
Felix
F
Olasagasti
Hyunsung John
HJ
Kim
Nader
N
Pourmand
David W
DW
Deamer
D000241:Adenosine / Q000031:analogs & derivatives / Q000737:chemistry; D001483:Base Sequence; D004261:DNA Replication; D004277:DNA, Single-Stranded / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics; D003854:Deoxyribonucleotides / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics; D020404:Glycerophospholipids / Q000737:chemistry; D008958:Models, Molecular; D009690:Nucleic Acid Conformation; D058105:Polymerization; D013696:Temperature
C509561:1-palmitoyl-2-oleoyl-phosphatidyl-3-adenosine; D004277:DNA, Single-Stranded; D003854:Deoxyribonucleotides; D020404:Glycerophospholipids; D000241:Adenosine