Genetic characterization of hantaviruses associated with sigmodontine rodents in an endemic area for hantavirus pulmonary syndrome in southern Brazil.
An ecological assessment of reservoir species was conducted in a rural area (Jaborá) in the mid-west of the state of Santa Catarina in southern Brazil, where hantavirus pulmonary syndrome is endemic, to evaluate the prevalence of hantavirus infection in wild rodents. Blood and tissue samples were collected from 507 rodents during seven field trips from March 2004 to April 2006. Some of the animals were karyotyped to confirm morphological identification. Phylogenetic reconstructions of rodent specimens, based on the mitochondrial DNA cytochrome b gene sequences, were also obtained. Hantavirus antibody was found in 22 (4.3%) of the 507 rodents: 5 Akodon montensis, 2 Akodon paranaensis, 14 Oligoryzomys nigripes, and 1 Sooretamys angouya. Viral RNAs detected in O. nigripes and A. montensis were amplified and sequenced. O. nigripes virus genome was 97.5% (nt) and 98.4% (nt) identical to sequences published for Araucaria (Juquitiba-like) virus based on N and G2 fragment sequences. Viral sequences from A. montensis strain showed 89% and 88% nucleotide identities in a 905-nt fragment of the nucleocapsid (N) protein-coding region of the S segment when it was compared with two other Akodontine rodent-associated viruses from Paraguay, A. montensis and Akodon cursor, respectively. Phylogenetic analysis showed the cocirculation of two genetic hantavirus lineages in the state of Santa Catarina, one from O. nigripes and the other from A. montensis, previously characterized in Brazil and Paraguay, respectively. The hantavirus associated with A. montensis, designed Jaborá virus, represents a distinct phylogenetic lineage among the Brazilian hantaviruses.
Laboratório de Hantaviroses e Rickettsioses, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil. reoliveira@ioc.fiocruz.br
Renata Carvalho
RC
de Oliveira
Paula J
PJ
Padula
Raphael
R
Gomes
Valeria P
VP
Martinez
Carla
C
Bellomo
Cibele R
CR
Bonvicino
Danúbia Inês
DI
Freire e Lima
Camila
C
Bragagnolo
Antônio C S
AC
Caldas
Paulo S
PS
D'Andrea
Elba R S
ER
de Lemos
D000818:Animals; D000914:Antibodies, Viral / Q000097:blood*; D001483:Base Sequence; D001938:Brazil / Q000453:epidemiology; D036022:Capsid Proteins / Q000235:genetics; D045303:Cytochromes b / Q000235:genetics; D004272:DNA, Mitochondrial / Q000737:chemistry / Q000235:genetics; D004197:Disease Reservoirs / Q000821:virology; D019353:Endemic Diseases; D005260:Female; D014644:Genetic Variation; D006476:Orthohantavirus / Q000145:classification / Q000235:genetics* / Q000276:immunology; D018804:Hantavirus Pulmonary Syndrome / Q000453:epidemiology* / Q000821:virology; D008297:Male; D008969:Molecular Sequence Data; D010802:Phylogeny; D015995:Prevalence; D012367:RNA, Viral / Q000097:blood; D012376:Rodent Diseases / Q000453:epidemiology / Q000821:virology*; D017422:Sequence Analysis, DNA; D016205:Sigmodontinae / Q000145:classification / Q000235:genetics / Q000821:virology; D014758:Viral Core Proteins / Q000235:genetics; D014764:Viral Proteins / Q000235:genetics
D000914:Antibodies, Viral; D036022:Capsid Proteins; D004272:DNA, Mitochondrial; D012367:RNA, Viral; D014758:Viral Core Proteins; D014764:Viral Proteins; C111782:nucleocapsid protein, Hantaan virus; D045303:Cytochromes b