title: Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.
abstract: Computation underlies the organization of cells into higher-order structures, for example during development or the spatial association of bacteria in a biofilm. Each cell performs a simple computational operation, but when combined with cell-cell communication, intricate patterns emerge. Here we study this process by combining a simple genetic circuit with quorum sensing to produce more complex computations in space. We construct a simple NOR logic gate in Escherichia coli by arranging two tandem promoters that function as inputs to drive the transcription of a repressor. The repressor inactivates a promoter that serves as the output. Individual colonies of E. coli carry the same NOR gate, but the inputs and outputs are wired to different orthogonal quorum-sensing 'sender' and 'receiver' devices. The quorum molecules form the wires between gates. By arranging the colonies in different spatial configurations, all possible two-input gates are produced, including the difficult XOR and EQUALS functions. The response is strong and robust, with 5- to >300-fold changes between the 'on' and 'off' states. This work helps elucidate the design rules by which simple logic can be harnessed to produce diverse and complex calculations by rewiring communication between cells.
authors.affiliation: Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158, USA.
authors.forename: Alvin
authors.initials: A
authors.lastname: Tamsir
authors.forename: Jeffrey J
authors.initials: JJ
authors.lastname: Tabor
authors.forename: Christopher A
authors.initials: CA
authors.lastname: Voigt
mesh_terms: D057005:Bioengineering; D002451:Cell Compartmentation; D004926:Escherichia coli / Q000166:cytology* / Q000235:genetics / Q000378:metabolism*; D029968:Escherichia coli Proteins / Q000235:genetics; D015964:Gene Expression Regulation, Bacterial / Q000235:genetics; D053263:Gene Regulatory Networks; D005798:Genes, Bacterial / Q000235:genetics; D008128:Logic; D011401:Promoter Regions, Genetic / Q000235:genetics; D053038:Quorum Sensing / Q000235:genetics* / Q000502:physiology*; D049490:Systems Biology
chemical_list: D029968:Escherichia coli Proteins