title: Exploration of the correlation between solvation dynamics and internal dynamics of a protein.
abstract: Protein function is intimately related to the dynamics of the protein as well as to the dynamics of the solvent shell around the protein. Although it has been argued extensively that protein dynamics is slaved to solvent dynamics, experimental support for this hypothesis is scanty. In this study, measurements of fluorescence anisotropy decay kinetics have been used to determine the motional dynamics of the fluorophore acrylodan linked to several locations in a small protein barstar in its various structural forms, including the native and unfolded states as well as the acid and protofibril forms. Fluorescence upconversion and streak camera measurements have been used to determine the solvation dynamics around the fluorophore. Both the motional dynamics and solvent dynamics were found to be dependent upon the location of the probe as well as on the structural form of the protein. While the (internal) motional dynamics of the fluorophore occur in the 0.1-3 ns time domain, the observed mean solvent relaxation times are in the range of 20-300 ps. A strong positive correlation between these two dynamical modes was found in spite of the significant difference in their time scales. This observed correlation is a strong indicator of the coupling between solvent dynamics and the dynamics in the protein.
authors.affiliation: Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India.
authors.forename: Anjali
authors.initials: A
authors.lastname: Jha
authors.forename: Kunihiko
authors.initials: K
authors.lastname: Ishii
authors.forename: Jayant B
authors.initials: JB
authors.lastname: Udgaonkar
authors.forename: Tahei
authors.initials: T
authors.lastname: Tahara
authors.forename: G
authors.initials: G
authors.lastname: Krishnamoorthy
mesh_terms: D015081:2-Naphthylamine / Q000031:analogs & derivatives / Q000737:chemistry; D001426:Bacterial Proteins / Q000737:chemistry*; D005454:Fluorescence Polarization; D011487:Protein Conformation; D012995:Solubility; D014867:Water / Q000737:chemistry*
chemical_list: D001426:Bacterial Proteins; D014867:Water; C057438:barstar protein, Bacillus amyloliquefaciens; C038518:acrylodan; D015081:2-Naphthylamine