title: Bistability analysis of an apoptosis model in the presence of nitric oxide.
abstract: Bistability in apoptosis, or programmed cell death, is crucial for the healthy functioning of multicellular organisms. The aim in this study is to show the presence of bistability in a mitochondria-dependent apoptosis model under nitric oxide effects using chemical reaction network theory. The model equations are a set of coupled ordinary differential equations arising from the assumed mass action kinetics. Whether these equations have a capacity for bistability (cell survival and apoptosis) is determined using a modular approach in which the model is decomposed into modules. Each module contains only a subset of the whole model and is analyzed separately. It is seen that bistability in a module is preserved throughout the whole model after adding the remaining reactions in the pathway on these modules. It is also found that inhibitor effect of some proteins and the appearance of a reacting protein in a later stage as a product is a desired feature but not sufficient for bistability (in the absence of cooperativity effects). On the whole model, two apoptotic and two cell survival states are obtained depending on the initial cell conditions. The results suggest that the antiapoptotic effects of nitric oxide species are responsible for the bistable character of the apoptotic pathway when cooperativity is not assumed in the apoptosome formation.
authors.affiliation: Chemical Engineering Department, Bogazici University, Istanbul, Turkey.
authors.forename: S Murat
authors.initials: SM
authors.lastname: Sen
authors.forename: E Zerrin
authors.initials: EZ
authors.lastname: Bagci
authors.forename: Mehmet C
authors.initials: MC
authors.lastname: Camurdan
mesh_terms: D017209:Apoptosis / Q000502:physiology*; D020169:Caspases / Q000502:physiology; D008928:Mitochondria / Q000502:physiology; D008954:Models, Biological; D009569:Nitric Oxide / Q000502:physiology*
chemical_list: D009569:Nitric Oxide; D020169:Caspases