title: How to make a minimal genome for synthetic minimal cell.
abstract: As a key focus of synthetic biology, building a minimal artificial cell has given rise to many discussions. A synthetic minimal cell will provide an appropriate chassis to integrate functional synthetic parts, devices and systems with functions that cannot generally be found in nature. The design and construction of a functional minimal genome is a key step while building such a cell/chassis since all the cell functions can be traced back to the genome. Kinds of approaches, based on bioinformatics and molecular biology, have been developed and proceeded to derive essential genes and minimal gene sets for the synthetic minimal genome. Experiments about streamlining genomes of model bacteria revealed genome reduction led to unanticipated beneficial properties, such as high electroporation efficiency and accurate propagation of recombinant genes and plasmids that were unstable in other strains. Recent achievements in chemical synthesis technology for large DNA segments together with the rapid development of the whole-genome sequencing, have transferred synthesis of genes to assembly of the whole genomes based on oligonucleotides, and thus created strong preconditions for synthesis of artificial minimal genome. Here in this article, we review briefly the history and current state of research in this field and summarize the main methods for making a minimal genome. We also discuss the impacts of minimized genome on metabolism and regulation of artificial cell.
authors.affiliation: Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China.
authors.forename: Liu-Yan
authors.initials: LY
authors.lastname: Zhang
authors.forename: Su-Hua
authors.initials: SH
authors.lastname: Chang
authors.forename: Jing
authors.initials: J
authors.lastname: Wang
mesh_terms: D058045:Artificial Cells / Q000378:metabolism*; D004247:DNA / Q000096:biosynthesis / Q000138:chemical synthesis / Q000737:chemistry; D016678:Genome / Q000235:genetics; D053858:Metabolic Networks and Pathways / Q000235:genetics; D058615:Synthetic Biology / Q000379:methods*
chemical_list: D004247:DNA