title: Hydrogen bond perturbation in hen egg white lysozyme by external electromagnetic fields: a nonequilibrium molecular dynamics study.
abstract: Nonequilibrium molecular dynamics simulations of a charge-neutral mutant of hen egg white lysozyme have been performed at 300 K and 1 bar in the presence of external microwave fields (2.45 to 100 GHz) of an rms electric field intensity of 0.05 V Å(-1). A systematic study was carried out of the distributions of persistence times and energies of each intraprotein hydrogen bond in between breakage and reformation, in addition to overall persistence over 20 ns simulations, vis-á-vis equilibrium, zero-field conditions. It was found that localized translational motion for formally charged residues led to greater disruption of associated hydrogen bonds, although induced rotational motion of strongly dipolar residues also led to a degree of hydrogen bond perturbation. These effects were most apparent in the solvent exposed exterior of hen egg white lysozyme, in which the intraprotein hydrogen bonds tend to be weaker.
authors.affiliation: The SEC Strategic Research Cluster and the Centre for Synthesis and Chemical Biology, Conway Institute of Biomolecular and Biomedical Research, School of Chemical and Bioprocess Engineering, University College Dublin, Belfield, Dublin 4, Ireland.
authors.forename: Gleb Y
authors.initials: GY
authors.lastname: Solomentsev
authors.forename: Niall J
authors.initials: NJ
authors.lastname: English
authors.forename: Damian A
authors.initials: DA
authors.lastname: Mooney
mesh_terms: D000818:Animals; D004574:Electromagnetic Fields; D006860:Hydrogen Bonding / Q000528:radiation effects; D056004:Molecular Dynamics Simulation; D009113:Muramidase / Q000737:chemistry* / Q000235:genetics; D009154:Mutation; D011489:Protein Denaturation / Q000528:radiation effects
chemical_list: C421864:hen egg lysozyme; D009113:Muramidase