title: Genetic diversity of Ralstonia solanacearum strains from China assessed by PCR-based fingerprints to unravel host plant- and site-dependent distribution patterns.
abstract: Bacterial wilt caused by Ralstonia solanacearum is a serious threat to crop production in China. A collection of 319 R. solanacearum strains isolated from 14 different diseased host plants collected in 15 Chinese provinces was investigated by BOX fingerprints in order to test the influence of the site and the host plant on their genetic diversity. Phylotype, fliC-RFLP patterns and biovar were determined for all strains and the sequevar for 39 representative strains. The majority of strains belonged to the Asian phylotype I, shared identical fliC-RFLP patterns and were assigned to four biovars (bv3:123; bv4:162; bv5:3; and bv6:11). Twenty strains were phylotype II, assigned to biovar 2, and had distinct fliC-RFLP patterns. BOX-PCR fingerprints generated from the genomic DNA of each strain revealed a high diversity of the phylotype I strains, where 28 types of BOX fingerprints could be distinguished. While many BOX clusters comprised isolates from different provinces and several host plants, some groups contained isolates that were plant or site specific. All phylotype II isolates originating from 10 provinces belonged to sequevar 1 and displayed identical BOX patterns as the potato brown rot strains from various regions of the world.
authors.affiliation: Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China.
authors.forename: Qing-Yun
authors.initials: QY
authors.lastname: Xue
authors.forename: Yan-Ni
authors.initials: YN
authors.lastname: Yin
authors.forename: Wei
authors.initials: W
authors.lastname: Yang
authors.forename: Holger
authors.initials: H
authors.lastname: Heuer
authors.forename: Philippe
authors.initials: P
authors.lastname: Prior
authors.forename: Jian-Hua
authors.initials: JH
authors.lastname: Guo
authors.forename: Kornelia
authors.initials: K
authors.lastname: Smalla
mesh_terms: D002681:China; D018556:Crops, Agricultural / Q000382:microbiology*; D016172:DNA Fingerprinting; D005798:Genes, Bacterial / Q000235:genetics; D014644:Genetic Variation; D005838:Genotype; D054884:Host-Pathogen Interactions / Q000235:genetics*; D010641:Phenotype; D010802:Phylogeny; D043368:Ralstonia solanacearum / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification