title: Kinetics and mechanism of single-stranded DNA adsorption onto citrate-stabilized gold nanoparticles in colloidal solution.
abstract: A variety of rapid biomolecular assays under development rely on the selective adsorption of single-stranded DNA onto unfunctionalized, negatively charged, citrate-stabilized gold nanoparticles. We investigate the adsorption mechanism with a study of the binding kinetics and find strong evidence for the dominance of hydrophobic effects including linear compensation between the activation energy and the natural log of the Arrhenius prefactor and the correlation of the adsorption rate in the presence of various salts with the Hofmeister series. These results explain the selectivity for single-stranded over double-stranded DNA adsorption and contradict previous work citing an electrostatic DLVO-like mechanism. Our understanding should facilitate improvements to the selective-adsorption-based assays and, more generally, contribute to the understanding of interactions between like-charged species in aqueous solution.
authors.affiliation: Department of Physics, University of Rochester, Rochester, New York 14627, United States.
authors.forename: Edward M
authors.initials: EM
authors.lastname: Nelson
authors.forename: Lewis J
authors.initials: LJ
authors.lastname: Rothberg
mesh_terms: D000327:Adsorption; D001483:Base Sequence; D019343:Citric Acid / Q000737:chemistry*; D003102:Colloids; D004277:DNA, Single-Stranded / Q000737:chemistry* / Q000235:genetics; D006046:Gold / Q000737:chemistry*; D057927:Hydrophobic and Hydrophilic Interactions; D007700:Kinetics; D053768:Metal Nanoparticles / Q000737:chemistry*; D012996:Solutions; D012997:Solvents / Q000737:chemistry; D013816:Thermodynamics; D014783:Viscosity
chemical_list: D003102:Colloids; D004277:DNA, Single-Stranded; D012996:Solutions; D012997:Solvents; D019343:Citric Acid; D006046:Gold