title: Effect of feedback on the fidelity of information transmission of time-varying signals.
abstract: Living cells are continually exposed to environmental signals that vary in time. These signals are detected and processed by biochemical networks, which are often highly stochastic. To understand how cells cope with a fluctuating environment, we therefore have to understand how reliably biochemical networks can transmit time-varying signals. To this end, we must understand both the noise characteristics and the amplification properties of networks. In this paper, we use information theory to study how reliably signaling cascades employing autoregulation and feedback can transmit time-varying signals. We calculate the frequency dependence of the gain-to-noise ratio, which reflects how reliably a network transmits signals at different frequencies. We find that the gain-to-noise ratio may differ qualitatively from the power spectrum of the output, showing that the latter does not directly reflect signaling performance. Moreover, we find that autoactivation and autorepression increase and decrease the gain-to-noise ratio for all of frequencies, respectively. Positive feedback specifically enhances information transmission at low frequencies, while negative feedback increases signal fidelity at high frequencies. Our analysis not only elucidates the role of autoregulation and feedback in naturally occurring biological networks, but also reveals design principles that can be used for the reliable transmission of time-varying signals in synthetic gene circuits.
authors.affiliation: FOM Institute for Atomic and Molecular Physics, Science Park 104, 1098 XG Amsterdam, The Netherlands. deronde@amolf.nl
authors.forename: Wiet Hendrik
authors.initials: WH
authors.lastname: de Ronde
authors.forename: Filipe
authors.initials: F
authors.lastname: Tostevin
authors.forename: Pieter Rein
authors.initials: PR
authors.lastname: ten Wolde
mesh_terms: D005246:Feedback; D007257:Information Theory; D008962:Models, Theoretical; D016011:Normal Distribution; D011336:Probability; D013997:Time Factors