title: Molecular recognition of the antiretroviral drug abacavir: towards the development of a novel carbazole-based fluorosensor.
abstract: Due to their optical and electro-conductive attributes, carbazole derivatives are interesting materials for a large range of biosensor applications. In this study, we present the synthesis routes and fluorescence evaluation of newly designed carbazole fluorosensors that, by modification with uracil, have a special affinity for antiretroviral drugs via either Watson-Crick or Hoogsteen base pairing. To an N-octylcarbazole-uracil compound, four different groups were attached, namely thiophene, furane, ethylenedioxythiophene, and another uracil; yielding four different derivatives. Photophysical properties of these newly obtained derivatives are described, as are their interactions with the reverse transcriptase inhibitors such as abacavir, zidovudine, lamivudine and didanosine. The influence of each analyte on biosensor fluorescence was assessed on the basis of the Stern-Volmer equation and represented by Stern-Volmer constants. Consequently we have demonstrated that these structures based on carbazole, with a uracil group, may be successfully incorporated into alternative carbazole derivatives to form biosensors for the molecular recognition of antiretroviral drugs.
authors.affiliation: Institute of Organic and Macromolecular Chemistry, Friedrich-Schiller-University Jena, Humboldstrasse 10, 07743 Jena, Germany. krzysztof.idzik@pwr.wroc.pl
authors.forename: Krzysztof Ryszard
authors.initials: KR
authors.lastname: Idzik
authors.forename: Piotr J
authors.initials: PJ
authors.lastname: Cywinski
authors.forename: Charles G
authors.initials: CG
authors.lastname: Cranfield
authors.forename: Gerhard J
authors.initials: GJ
authors.lastname: Mohr
authors.forename: Rainer
authors.initials: R
authors.lastname: Beckert
mesh_terms: D044966:Anti-Retroviral Agents / Q000032:analysis; D002227:Carbazoles; D015224:Dideoxynucleosides / Q000032:analysis*; D005456:Fluorescent Dyes / Q000138:chemical synthesis; D054303:HIV Reverse Transcriptase; D015336:Molecular Probe Techniques; D014498:Uracil; D000099227:Abacavir
chemical_list: D044966:Anti-Retroviral Agents; D002227:Carbazoles; D015224:Dideoxynucleosides; D005456:Fluorescent Dyes; D054303:HIV Reverse Transcriptase; D014498:Uracil; D000099227:Abacavir; C041514:carbazole