title: Biomolecularmodeling and simulation: a field coming of age.
abstract: We assess the progress in biomolecular modeling and simulation, focusing on structure prediction and dynamics, by presenting the field’s history, metrics for its rise in popularity, early expressed expectations, and current significant applications. The increases in computational power combined with improvements in algorithms and force fields have led to considerable success, especially in protein folding, specificity of ligand/biomolecule interactions, and interpretation of complex experimental phenomena (e.g. NMR relaxation, protein-folding kinetics and multiple conformational states) through the generation of structural hypotheses and pathway mechanisms. Although far from a general automated tool, structure prediction is notable for proteins and RNA that preceded the experiment, especially by knowledge-based approaches. Thus, despite early unrealistic expectations and the realization that computer technology alone will not quickly bridge the gap between experimental and theoretical time frames, ongoing improvements to enhance the accuracy and scope of modeling and simulation are propelling the field onto a productive trajectory to become full partner with experiment and a field on its own right.
authors.affiliation: Department of Chemistry, New York University, 100 Washington Square East, Silver Building, New York, NY 10003, USA. schlick@nyu.edu
authors.forename: Tamar
authors.initials: T
authors.lastname: Schlick
authors.forename: Rosana
authors.initials: R
authors.lastname: Collepardo-Guevara
authors.forename: Leif Arthur
authors.initials: LA
authors.lastname: Halvorsen
authors.forename: Segun
authors.initials: S
authors.lastname: Jung
authors.forename: Xia
authors.initials: X
authors.lastname: Xiao
mesh_terms: D000465:Algorithms; D006801:Humans; D008958:Models, Molecular; D008967:Molecular Biology / Q000379:methods* / Q000639:trends; D056004:Molecular Dynamics Simulation / Q000639:trends; D011506:Proteins / Q000737:chemistry*; D012313:RNA / Q000737:chemistry*
chemical_list: D011506:Proteins; D012313:RNA