Base-calling for next-generation sequencing platforms.
Next-generation sequencing platforms are dramatically reducing the cost of DNA sequencing. With these technologies, bases are inferred from light intensity signals, a process commonly referred to as base-calling. Thus, understanding and improving the quality of sequence data generated using these approaches are of high interest. Recently, a number of papers have characterized the biases associated with base-calling and proposed methodological improvements. In this review, we summarize recent development of base-calling approaches for the Illumina and Roche 454 sequencing platforms.
ETH Zurich, Switzerland.
Christian
C
Ledergerber
Christophe
C
Dessimoz
D000818:Animals; D001483:Base Sequence; D006801:Humans; D017422:Sequence Analysis, DNA / Q000379:methods*
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