An efficient statistical feature selection approach for classification of gene expression data.
Classification of gene expression data plays a significant role in prediction and diagnosis of diseases. Gene expression data has a special characteristic that there is a mismatch in gene dimension as opposed to sample dimension. All genes do not contribute for efficient classification of samples. A robust feature selection algorithm is required to identify the important genes which help in classifying the samples efficiently. In order to select informative genes (features) based on relevance and redundancy characteristics, many feature selection algorithms have been introduced in the past. Most of the earlier algorithms require computationally expensive search strategy to find an optimal feature subset. Existing feature selection methods are also sensitive to the evaluation measures. The paper introduces a novel and efficient feature selection approach based on statistically defined effective range of features for every class termed as ERGS (Effective Range based Gene Selection). The basic principle behind ERGS is that higher weight is given to the feature that discriminates the classes clearly. Experimental results on well-known gene expression datasets illustrate the effectiveness of the proposed approach. Two popular classifiers viz. Nave Bayes Classifier (NBC) and Support Vector Machine (SVM) have been used for classification. The proposed feature selection algorithm can be helpful in ranking the genes and also is capable of identifying the most relevant genes responsible for diseases like leukemia, colon tumor, lung cancer, diffuse large B-cell lymphoma (DLBCL), prostate cancer.
Department of Mathematics, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India. bchandra104@yahoo.co.in
B
B
Chandra
Manish
M
Gupta
D000465:Algorithms; D001185:Artificial Intelligence; D001499:Bayes Theorem; D016009:Chi-Square Distribution; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D005260:Female; D020869:Gene Expression Profiling / Q000379:methods*; D006801:Humans; D008297:Male; D008490:Medical Informatics / Q000379:methods*; D009369:Neoplasms / Q000175:diagnosis / Q000235:genetics* / Q000378:metabolism