Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.
BACKGROUND
The shrimp Rimicaris exoculata dominates the faunal biomass at many deep-sea hydrothermal vent sites at the Mid-Atlantic Ridge. In its enlarged gill chamber it harbors a specialized epibiotic bacterial community for which a nutritional role has been proposed.


RESULTS
We analyzed specimens from the Snake Pit hydrothermal vent field on the Mid-Atlantic Ridge by complementing a 16S rRNA gene survey with the analysis of genes involved in carbon, sulfur and hydrogen metabolism. In addition to Epsilon- and Gammaproteobacteria, the epibiotic community unexpectedly also consists of Deltaproteobacteria of a single phylotype, closely related to the genus Desulfocapsa. The association of these phylogenetic groups with the shrimp was confirmed by fluorescence in situ hybridization. Based on functional gene analyses, we hypothesize that the Gamma- and Epsilonproteobacteria are capable of autotrophic growth by oxidizing reduced sulfur compounds, and that the Deltaproteobacteria are also involved in sulfur metabolism. In addition, the detection of proteobacterial hydrogenases indicates the potential for hydrogen oxidation in these communities. Interestingly, the frequency of these phylotypes in 16S rRNA gene clone libraries from the mouthparts differ from that of the inner lining of the gill chamber, indicating potential functional compartmentalization.


CONCLUSIONS
Our data show the specific association of autotrophic bacteria with Rimicaris exoculata from the Snake Pit hydrothermal vent field, and suggest that autotrophic carbon fixation is contributing to the productivity of the epibiotic community with the reductive tricarboxylic acid cycle as one important carbon fixation pathway. This has not been considered in previous studies of carbon fixation and stable carbon isotope composition of the shrimp and its epibionts. Furthermore, the co-occurrence of sulfur-oxidizing and sulfur-reducing epibionts raises the possibility that both may be involved in the syntrophic exchange of sulfur compounds, which could increase the overall efficiency of this epibiotic community.
Biology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Michael
M
Hügler
Jillian M
JM
Petersen
Nicole
N
Dubilier
Johannes F
JF
Imhoff
Stefan M
SM
Sievert
D000818:Animals; D002244:Carbon / Q000378:metabolism*; D057486:Carbon Cycle; D033364:Decapoda / Q000378:metabolism* / Q000382:microbiology*; D004734:Energy Metabolism; D020565:Epsilonproteobacteria / Q000302:isolation & purification; D020563:Gammaproteobacteria / Q000302:isolation & purification; D006859:Hydrogen / Q000378:metabolism; D009792:Oceans and Seas; D013455:Sulfur / Q000378:metabolism; D013559:Symbiosis
D013455:Sulfur; D002244:Carbon; D006859:Hydrogen
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