title: Yeast cells can access distinct quiescent states.
abstract: We conducted a phenotypic, transcriptional, metabolic, and genetic analysis of quiescence in yeast induced by starvation of prototrophic cells for one of three essential nutrients (glucose, nitrogen, or phosphate) and compared those results with those obtained with cells growing slowly due to nutrient limitation. These studies address two related questions: (1) Is quiescence a state distinct from any attained during mitotic growth, and (2) does the nature of quiescence differ depending on the means by which it is induced? We found that either limitation or starvation for any of the three nutrients elicits all of the physiological properties associated with quiescence, such as enhanced cell wall integrity and resistance to heat shock and oxidative stress. Moreover, the starvations result in a common transcriptional program, which is in large part a direct extrapolation of the changes that occur during slow growth. In contrast, the metabolic changes that occur upon starvation and the genetic requirements for surviving starvation differ significantly depending on the nutrient for which the cell is starved. The genes needed by cells to survive starvation do not overlap the genes that are induced upon starvation. We conclude that cells do not access a unique and discrete G(0) state, but rather are programmed, when nutrients are scarce, to prepare for a range of possible future stressors. Moreover, these survival strategies are not unique to quiescence, but are engaged by the cell in proportion to nutrient scarcity.
authors.affiliation: Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA.
authors.forename: Maja M
authors.initials: MM
authors.lastname: Klosinska
authors.forename: Christopher A
authors.initials: CA
authors.lastname: Crutchfield
authors.forename: Patrick H
authors.initials: PH
authors.lastname: Bradley
authors.forename: Joshua D
authors.initials: JD
authors.lastname: Rabinowitz
authors.forename: James R
authors.initials: JR
authors.lastname: Broach
mesh_terms: D002453:Cell Cycle / Q000187:drug effects / Q000235:genetics / Q000502:physiology*; D049109:Cell Proliferation / Q000187:drug effects; D002470:Cell Survival / Q000187:drug effects / Q000235:genetics; D016000:Cluster Analysis; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental / Q000187:drug effects; D015966:Gene Expression Regulation, Fungal / Q000187:drug effects; D050437:Genes, Developmental / Q000187:drug effects / Q000502:physiology; D005947:Glucose / Q000494:pharmacology; D053858:Metabolic Networks and Pathways / Q000187:drug effects / Q000235:genetics; D008954:Models, Biological; D009584:Nitrogen / Q000494:pharmacology; D030781:Organisms, Genetically Modified; D010710:Phosphates / Q000494:pharmacology; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism / Q000502:physiology; D013217:Starvation / Q000235:genetics / Q000378:metabolism / Q000503:physiopathology; D014158:Transcription, Genetic / Q000187:drug effects / Q000235:genetics; D015003:Yeasts / Q000166:cytology / Q000235:genetics / Q000378:metabolism / Q000502:physiology*
chemical_list: D010710:Phosphates; D005947:Glucose; D009584:Nitrogen