title: Quantification of circulating plasma DNA in Friedreich's ataxia and spinocerebellar ataxia types 2 and 12.
abstract: DNA triplet repeat expansion-associated ataxias, Friedreich's ataxia, and different types of spinocerebellar ataxias (SCAs) are progressive multisystem neurodegenerative disorders. The diagnosis of this wide group of inherited ataxias is essentially based on clinical findings. Cell-free circulating DNA in plasma has been considered as a powerful tool in clinical diagnosis and prognosis of several human diseases. In the present study, clinically suspected patients were assessed on the International Co-operative Ataxia Rating Scale and further confirmed by molecular analysis of DNA triplet repeats. Quantification of plasma DNA using a highly sensitive and DNA-specific PicoGreen fluorescent assay was done. We found significantly high levels (p < 0.001) of plasma DNA of 167 ± 43 ng/mL in Friedreich's ataxia patients (n = 15), 148 ± 29 ng/mL in SCA2 patients (n = 10), and 137 ± 29 ng/mL in SCA12 patients (n = 25), whereas those of healthy controls (n = 20) was only 59 ± 15 ng/mL. Therefore, we were able to distinguish between ataxia patients and healthy controls using plasma DNA. Although the precise mechanism by which plasma DNA enters into circulation is not known, significantly higher concentrations of plasma DNA appears to be due to neuronal and muscular degeneration in these patients. Identification of genes in plasma DNA, which are overexpressed or novel, can be a promising tool for the prognosis of these diseases.
authors.affiliation: Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
authors.forename: Vishnu
authors.initials: V
authors.lastname: Swarup
authors.forename: Achal K
authors.initials: AK
authors.lastname: Srivastava
authors.forename: Madakasira V
authors.initials: MV
authors.lastname: Padma
authors.forename: Moganty R
authors.initials: MR
authors.lastname: Rajeswari
mesh_terms: D000293:Adolescent; D000328:Adult; D015415:Biomarkers; D016022:Case-Control Studies; D002648:Child; D002675:Child, Preschool; D004247:DNA / Q000097:blood* / Q000302:isolation & purification; D005621:Friedreich Ataxia / Q000175:diagnosis* / Q000235:genetics*; D005799:Genes, Dominant; D006801:Humans; D008875:Middle Aged; D016133:Polymerase Chain Reaction; D011379:Prognosis; D020754:Spinocerebellar Ataxias / Q000175:diagnosis* / Q000235:genetics*; D018911:Trinucleotide Repeats; D055815:Young Adult
chemical_list: D015415:Biomarkers; D004247:DNA