title: The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.
abstract: The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.
authors.forename: Konstantinos
authors.initials: K
authors.lastname: Mavromatis
authors.forename: Natalia N
authors.initials: NN
authors.lastname: Ivanova
authors.forename: I-Min A
authors.initials: IM
authors.lastname: Chen
authors.forename: Ernest
authors.initials: E
authors.lastname: Szeto
authors.forename: Victor M
authors.initials: VM
authors.lastname: Markowitz
authors.forename: Nikos C
authors.initials: NC
authors.lastname: Kyrpides