title: Transcriptional profiling to identify biomarkers of disease and drug response.
abstract: The discovery, biological qualification and analytical validation of genomic biomarkers requires extensive collaborations between individuals with expertise in biology, statistics, bioinformatics, chemistry, clinical medicine, regulatory science and so on. For clinical utility, blood-borne biomarkers (e.g., mRNA and miRNA) of organ damage, drug toxicity and/or response would be preferred to those that are tissue based. Currently used biomarkers such as serum creatinine (indicating renal dysfunction) denote organ damage whether caused by disease, physical injury or drugs. Therefore, it is anticipated that studies of disease will discover biomarkers that can also be used to identify drug-induced injury and vice versa. This article describes transcriptomic blood-borne biomarkers that have been reported to be connected with disease and drug toxicity. Much more qualification and validation needs to be carried out before many of these biomarkers can prove useful. Discussed here are some of the lessons learned and roadblocks to success.
authors.affiliation: Division of Systems Biology, HFT-230, National Center for Toxicological Research, US FDA, 3900 NCTR Rd, Jefferson, AR 72079-4502, USA. donna.mendrick@fda.hhs.gov
authors.forename: Donna L
authors.initials: DL
authors.lastname: Mendrick
mesh_terms: D000818:Animals; D002318:Cardiovascular Diseases / Q000097:blood / Q000175:diagnosis / Q000235:genetics; D003920:Diabetes Mellitus / Q000097:blood / Q000175:diagnosis / Q000235:genetics; D004194:Disease / Q000235:genetics*; D064420:Drug-Related Side Effects and Adverse Reactions / Q000097:blood* / Q000175:diagnosis / Q000235:genetics*; D020869:Gene Expression Profiling; D005819:Genetic Markers; D023281:Genomics; D006801:Humans; D007249:Inflammation / Q000097:blood / Q000175:diagnosis / Q000235:genetics; D035683:MicroRNAs / Q000097:blood; D009422:Nervous System Diseases / Q000097:blood / Q000175:diagnosis / Q000235:genetics; D010190:Pancreatic Neoplasms / Q000097:blood / Q000175:diagnosis / Q000235:genetics; D040901:Proteomics; D012333:RNA, Messenger / Q000097:blood; D051381:Rats
chemical_list: D005819:Genetic Markers; D035683:MicroRNAs; D012333:RNA, Messenger