title: Neuronal tracing for connectomic studies.
abstract: Reconstruction of the complete wiring diagram, or connectome, of a neural circuit provides an alternative approach to conventional circuit analysis. One major obstacle of connectomics lies in segmenting and tracing neuronal processes from the vast number of images obtained with optical or electron microscopy. Here I review recent progress in automated tracing algorithms for connectomic reconstruction with fluorescence and electron microscopy, and discuss the challenges to image analysis posed by novel optical imaging techniques.
authors.affiliation: James H. Clark Center for Biomedical Engineering and Sciences, Department of Biological Sciences, Stanford University, Stanford, CA, USA. julu@stanford.edu
authors.forename: Ju
authors.initials: J
authors.lastname: Lu
mesh_terms: D000818:Animals; D001931:Brain Mapping / Q000379:methods / Q000639:trends; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods / Q000639:trends*; D008854:Microscopy, Electron / Q000379:methods / Q000639:trends; D008856:Microscopy, Fluorescence / Q000379:methods / Q000639:trends; D009434:Neural Pathways / Q000166:cytology / Q000502:physiology; D056347:Neuroanatomical Tract-Tracing Techniques / Q000379:methods / Q000639:trends*; D012985:Software Design