title: GPDE: A biological proteomic database for biomarker discovery and evaluation.
abstract: Clinical proteomics faces extremely complex and variable data. Here, we present an updated version of the Griss Proteomics Database Engine (GPDE): A free biological proteomic database specifically designed for clinical proteomics and biomarker discovery (http://gpde.sourceforge.net). It combines experiments based on investigated cell types thereby supporting customizable biological meta-analyses. Through the new features described here, the GPDE now became a powerful yet easy-to-use tool to support the fast identification and reliable evaluation of biomarker candidates.
authors.affiliation: Department of Medicine I, Comprehensive Cancer Center, Medical University of Vienna, Vienna, Austria.
authors.forename: Johannes
authors.initials: J
authors.lastname: Griss
authors.forename: Verena
authors.initials: V
authors.lastname: Haudek-Prinz
authors.forename: Christopher
authors.initials: C
authors.lastname: Gerner
mesh_terms: D000818:Animals; D015415:Biomarkers / Q000032:analysis; D016208:Databases, Factual; D006801:Humans; D013058:Mass Spectrometry; D015201:Meta-Analysis as Topic; D011506:Proteins / Q000032:analysis* / Q000145:classification*; D040901:Proteomics; D013045:Species Specificity
chemical_list: D015415:Biomarkers; D011506:Proteins