title: Analyzing and visualizing residue networks of protein structures.
abstract: The study of individual amino acid residues and their molecular interactions in protein structures is crucial for understanding structure-function relationships. Recent work has indicated that residue networks derived from 3D protein structures provide additional insights into the structural and functional roles of interacting residues. Here, we present the new software tools RINerator and RINalyzer for the automatized generation, 2D visualization, and interactive analysis of residue interaction networks, and highlight their use in different application scenarios.
authors.affiliation: Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany.
authors.forename: Nadezhda T
authors.initials: NT
authors.lastname: Doncheva
authors.forename: Karsten
authors.initials: K
authors.lastname: Klein
authors.forename: Francisco S
authors.initials: FS
authors.lastname: Domingues
authors.forename: Mario
authors.initials: M
authors.lastname: Albrecht
mesh_terms: D006801:Humans; D008958:Models, Molecular; D011506:Proteins / Q000737:chemistry*; D012985:Software Design; D040681:Structural Homology, Protein
chemical_list: D011506:Proteins