title: In silico identification of novel protective VSG antigens expressed by Trypanosoma brucei and an effort for designing a highly immunogenic DNA vaccine using IL-12 as adjuvant.
abstract: African trypanosomiasis continues to be a major health problem, with more adults dying from this disease world-wide. As the sequence diversity of Trypanosoma brucei is extreme, with VSGs having 15-25% identity with most other VSGs, hence it displays a huge diversity of adaptations and host specificities. Therefore the need for an improved vaccine has become an international priority. The highly conserved and specific epitopes acting as both CD8+ and CD4+ T-cell epitopes (FLINKKPAL and FTALCTLAA) were predicted from large bunch of VSGs of T. brucei. Besides, some other potential epitopes with very high affinity for MHC I and II molecules were also determined while taking consideration on the most common HLA in the general population which accounts for major ethnicities. The vaccine candidates were found to be effective even for non-african populations as predicted by population coverage analysis. Hence the migrating travelers acting as a spread means of the infection can probably also be treated successfully after injection of such a multiepitopic vaccine. Exploiting the immunoinformatics approaches, we designed a potential vaccine by using the consensus epitopic sequence of 388 VSG proteins of T. brucei and performed in silico cloning of multiepitopic antigenic DNA sequence in pBI-CMV1 vector. Moreover, various techniques like codon adaptation, CpG optimization, removal of self recognized epitopes, use of adjuvant and co-injection with plasmids expressing immune-stimulatory molecules were implemented to enhance the immunogenicity of the proposed in silico vaccine.
authors.affiliation: Centre of Bioinformatics, School of Biotechnology, Shri Mata Vaishno Devi (SMVD) University, Jammu, J&K 182320, India. bashirakhlaq@gmail.com
authors.forename: Bashir Akhlaq
authors.initials: BA
authors.lastname: Akhoon
authors.forename: Parvez Singh
authors.initials: PS
authors.lastname: Slathia
authors.forename: Preeti
authors.initials: P
authors.lastname: Sharma
authors.forename: Shishir Kumar
authors.initials: SK
authors.lastname: Gupta
authors.forename: Vijeshwar
authors.initials: V
authors.lastname: Verma
mesh_terms: D000276:Adjuvants, Immunologic; D000595:Amino Acid Sequence; D000818:Animals; D000940:Antigenic Variation; D015195:Drug Design; D018984:Epitopes, T-Lymphocyte / Q000737:chemistry / Q000235:genetics / Q000276:immunology*; D015395:Histocompatibility Antigens Class I / Q000378:metabolism; D000949:Histocompatibility Antigens Class II / Q000378:metabolism; D006801:Humans; D018664:Interleukin-12 / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D008969:Molecular Sequence Data; D016052:Protozoan Vaccines / Q000235:genetics / Q000276:immunology*; D014346:Trypanosoma brucei brucei / Q000235:genetics / Q000276:immunology* / Q000378:metabolism; D014353:Trypanosomiasis, African / Q000276:immunology / Q000469:parasitology / Q000517:prevention & control; D019444:Vaccines, DNA / Q000276:immunology*; D014643:Variant Surface Glycoproteins, Trypanosoma / Q000737:chemistry / Q000235:genetics / Q000276:immunology* / Q000378:metabolism
chemical_list: D000276:Adjuvants, Immunologic; D018984:Epitopes, T-Lymphocyte; D015395:Histocompatibility Antigens Class I; D000949:Histocompatibility Antigens Class II; D016052:Protozoan Vaccines; D019444:Vaccines, DNA; D014643:Variant Surface Glycoproteins, Trypanosoma; D018664:Interleukin-12