title: Force fluctuations assist nanopore unzipping of DNA.
abstract: We experimentally study the statistical distributions and the voltage dependence of the unzipping time of 45 base-pair-long double-stranded DNA through a nanopore. We then propose a quantitative theoretical description considering the nanopore unzipping process as a random walk of the opening fork through the DNA sequence energy landscape biased by a time-fluctuating force. To achieve quantitative agreement fluctuations need to be correlated over the millisecond range and have an amplitude of order k(B)T/bp. Significantly slower or faster fluctuations are not appropriate, suggesting that the unzipping process is efficiently enhanced by noise in the kHz range. We further show that the unzipping time of short 15 base-pair hairpins does not always increase with the global stability of the double helix and we theoretically study the role of DNA elasticity on the conversion of the electrical bias into a mechanical unzipping force.
authors.affiliation: Nanobiophysics Lab, UMR CNRS Gulliver, ESPCI, 10 rue Vauquelin, F-75005 Paris, France. virgile.viasnoff@espci.fr
authors.forename: V
authors.initials: V
authors.lastname: Viasnoff
authors.forename: N
authors.initials: N
authors.lastname: Chiaruttini
authors.forename: J
authors.initials: J
authors.lastname: Muzard
authors.forename: U
authors.initials: U
authors.lastname: Bockelmann
mesh_terms: D003198:Computer Simulation; D004247:DNA / Q000737:chemistry* / Q000648:ultrastructure*; D004574:Electromagnetic Fields; D008956:Models, Chemical; D008958:Models, Molecular; D015233:Models, Statistical; D009690:Nucleic Acid Conformation; D009691:Nucleic Acid Denaturation; D016062:Porosity; D013314:Stress, Mechanical
chemical_list: D004247:DNA