title: Critical assessment of OmpF channel selectivity: merging information from different experimental protocols.
abstract: The ion selectivity of a channel can be quantified in several ways by using different experimental protocols. A wide, mesoscopic channel, the OmpF porin of the outer membrane of E. coli, serves as a case study for comparing and analysing several measures of the channel cation-anion permeability in chlorides of alkali metals (LiCl, NaCl, KCl, CsCl). We show how different insights can be gained and integrated to rationalize the global image of channel selectivity. To this end, reversal potential, channel conductance and bi-ionic potential (two different salts with a common anion on each side of the channel but with the same concentration) experiments are discussed in light of an electrodiffusion model based on the Poisson-Nernst-Planck formalism. Measurements and calculations based on the atomic crystal structure of the channel show that each protocol displays a particular balance between the different sources of selectivity.
authors.affiliation: Department of Physics, Laboratory of Molecular Biophysics, Universitat Jaume I, Avenida Sos Baynat s/n, 12080 Castellón, Spain.
authors.forename: M L
authors.initials: ML
authors.lastname: López
authors.forename: E
authors.initials: E
authors.lastname: García-Giménez
authors.forename: V M
authors.initials: VM
authors.lastname: Aguilella
authors.forename: A
authors.initials: A
authors.lastname: Alcaraz
mesh_terms: D003198:Computer Simulation; D015640:Ion Channel Gating; D008956:Models, Chemical; D008958:Models, Molecular; D018272:Porins / Q000737:chemistry* / Q000648:ultrastructure*; D012680:Sensitivity and Specificity
chemical_list: C109237:OmpF protein; D018272:Porins