title: Development of a microarray for Enchytraeus albidus (Oligochaeta): preliminary tool with diverse applications.
abstract: Standard bioassays allow hazard assessment at the population level, but much remains to be learned about the molecular level response of organisms to stressors. The main aim of this study was the development of a DNA microarray for Enchytraeus albidus, a common soil worm species. Further, this microarray was tested using worms exposed to Cu, phenmedipham, and different soil types. Hybridization onto the developed microarray revealed several genes with homology to known sequences. Genes of interest were confirmed through real-time polymerase chain reaction. It was possible to discriminate between natural and chemical stressors and chemical concentrations. Gene responses were detected under conditions known to have effects in the reproduction of individuals. It was confirmed that the integration of different endpoints improves the assessment process and enhances the understanding of the modes of action of stressors. The chemical stress-induced genes were related to factors such as immune response, stress response, metabolic processes, and/or signal transduction. The present study represents the first step of a gene-level study in the ecologically relevant and standard test species E. albidus. It demonstrates the usefulness of cDNA normalization in the production of cDNA libraries of ecotoxicological standard organisms that are not genome models like E. albidus.
authors.affiliation: CESAM and Department of Biology, University of Aveiro, Aveiro, Portugal. mjamorim@ua.pt
authors.forename: Mónica J B
authors.initials: MJ
authors.lastname: Amorim
authors.forename: Sara C
authors.initials: SC
authors.lastname: Novais
authors.forename: Karlijn
authors.initials: K
authors.lastname: Van Der Ven
authors.forename: Tine
authors.initials: T
authors.lastname: Vandenbrouck
authors.forename: Amadeu M V M
authors.initials: AM
authors.lastname: Soares
authors.forename: Wim
authors.initials: W
authors.lastname: De Coen
mesh_terms: D000818:Animals; D002219:Carbamates / Q000633:toxicity; D003300:Copper / Q000633:toxicity; D015870:Gene Expression / Q000187:drug effects; D020869:Gene Expression Profiling; D009835:Oligochaeta / Q000187:drug effects* / Q000235:genetics / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012098:Reproduction / Q000187:drug effects; D018570:Risk Assessment / Q000379:methods; D012987:Soil / Q000032:analysis; D012989:Soil Pollutants / Q000633:toxicity*
chemical_list: D002219:Carbamates; D012987:Soil; D012989:Soil Pollutants; D003300:Copper; C100128:phenmedipham