title: Structural changes of Listeria monocytogenes Sortase A: a key to understanding the catalytic mechanism.
abstract: Listeria monocytogenes is one of the most virulent foodborne pathogens. L. monocytogenes Sortase A (SrtA) enzyme, which catalyzes the cell wall anchoring reaction of the leucine, proline, X, threonine, and glycine proteins (LPXTG, where X is any amino acid), is a target for the development of antilisteriosis drugs. In this study, the structure of the L. monocytogenes SrtA enzyme-substrate complex was obtained using homology modeling, molecular docking and molecular dynamics simulations. Explicit enzyme-substrate interactions in the inactive and active forms of the enzyme were compared, based on 30 ns simulations on each system. The active site arginine (Arg 197) was found to be able change its hydrogen donor interactions from the LP backbone carbonyl groups of the LPXTG substrate in the inactive form, to the TG backbone carbonyls in the active form, which could be of importance for holding the substrate in position for the catalytic process.
authors.affiliation: School of Chemistry, National University of Ireland, Galway, Ireland.
authors.forename: Boxue
authors.initials: B
authors.lastname: Tian
authors.forename: Leif A
authors.initials: LA
authors.lastname: Eriksson
mesh_terms: D019881:Aminoacyltransferases / Q000737:chemistry*; D001426:Bacterial Proteins / Q000737:chemistry*; D020134:Catalytic Domain; D003546:Cysteine Endopeptidases / Q000737:chemistry*; D008089:Listeria monocytogenes / Q000737:chemistry / Q000201:enzymology* / Q000378:metabolism; D056004:Molecular Dynamics Simulation; D013210:Staphylococcus / Q000201:enzymology; D040681:Structural Homology, Protein
chemical_list: D001426:Bacterial Proteins; D019881:Aminoacyltransferases; C120542:sortase A; D003546:Cysteine Endopeptidases