title: ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.
abstract: We describe here the ncIDP-assign extension for the popular NMR assignment program SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of connected resonances to the correct position in the sequence by making use of IDP random coil chemical shifts.
  
  
  BACKGROUND
  The ncIDP-assign extension is available at http://www.protein-nmr.org/.
authors.affiliation: Department of Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands. k.tamiola@rug.nl
authors.forename: Kamil
authors.initials: K
authors.lastname: Tamiola
authors.forename: Frans A A
authors.initials: FA
authors.lastname: Mulder
mesh_terms: D000465:Algorithms; D015816:Cell Adhesion Molecules, Neuronal / Q000737:chemistry; D006801:Humans; D008279:Magnetic Resonance Imaging; D008565:Membrane Proteins / Q000737:chemistry; D009419:Nerve Tissue Proteins / Q000737:chemistry; D019906:Nuclear Magnetic Resonance, Biomolecular; D011487:Protein Conformation; D012984:Software
chemical_list: D015816:Cell Adhesion Molecules, Neuronal; D008565:Membrane Proteins; D009419:Nerve Tissue Proteins; C098004:neuroligin 3