title: Chitinase-catalyzed hydrolysis of 4-nitrophenyl penta-N-acetyl-β-chitopentaoside as determined by real-time ESIMS: the 4-nitrophenyl moiety of the substrate interacts with the enzyme binding site.
abstract: 4-Nitrophenyl penta-N-acetyl-β-chitopentaoside [(GlcNAc)(5)-pNP] was hydrolyzed by a family GH-19 class II barley chitinase, and the enzymatic reaction was monitored by real-time ESIMS. The wild-type enzyme hydrolyzed (GlcNAc)(5)-pNP producing predominantly (GlcNAc)(3)-pNP and a lesser amount of (GlcNAc)(2)-pNP, indicating that the (GlcNAc)(5) portion of the substrate binds predominantly to subsites -2 ∼+3 and less frequently to -3 ∼+2. However, (GlcNAc)(2)-pNP was mainly produced from (GlcNAc)(5)-pNP by mutated enzymes, in which Trp72 and Trp82 located at +3/+4 were substituted with alanine (W72A and W72A/W82A), indicating that the (GlcNAc)(5) portion of the substrate binds predominantly to subsites -3 ∼+2 of the mutants. The mutations of the tryptophan residues resulted in a significant shift of the substrate-binding mode to the glycon side, supporting the idea that the indole side chain of Trp72 interacts with the 4-nitrophenyl moiety of the substrate at subsite +4.
authors.affiliation: Chair of Biopolymer Chemistry, Technische Universität München, Freising, Germany.
authors.forename: Thomas
authors.initials: T
authors.lastname: Letzel
authors.forename: Ellen
authors.initials: E
authors.lastname: Sahmel-Schneider
authors.forename: Karen
authors.initials: K
authors.lastname: Skriver
authors.forename: Takayuki
authors.initials: T
authors.lastname: Ohnuma
authors.forename: Tamo
authors.initials: T
authors.lastname: Fukamizo
mesh_terms: D001665:Binding Sites; D002384:Catalysis; D002688:Chitinases / Q000737:chemistry* / Q000378:metabolism*; D006868:Hydrolysis; D008958:Models, Molecular; D009596:Nitrophenols / Q000737:chemistry*; D009844:Oligosaccharides / Q000737:chemistry* / Q000378:metabolism*; D011485:Protein Binding; D021241:Spectrometry, Mass, Electrospray Ionization; D013379:Substrate Specificity; D014364:Tryptophan / Q000737:chemistry
chemical_list: D009596:Nitrophenols; D009844:Oligosaccharides; C024719:4-nitrophenyl; D014364:Tryptophan; D002688:Chitinases