title: Non-Boltzmann sampling and Bennett's acceptance ratio method: how to profit from bending the rules.
abstract: The exact computation of free energy differences requires adequate sampling of all relevant low energy conformations. Especially in systems with rugged energy surfaces, adequate sampling can only be achieved by biasing the exploration process, thus yielding non-Boltzmann probability distributions. To obtain correct free energy differences from such simulations, it is necessary to account for the effects of the bias in the postproduction analysis. We demonstrate that this can be accomplished quite simply with a slight modification of Bennett's Acceptance Ratio method, referring to this technique as Non-Boltzmann Bennett. We illustrate the method by several examples and show how a creative choice of the biased state(s) used during sampling can also improve the efficiency of free energy simulations.
authors.affiliation: Department of Computational Biological Chemistry, University of Vienna, Währingerstraße 17, A-1090 Vienna, Austria.
authors.forename: Gerhard
authors.initials: G
authors.lastname: König
authors.forename: Stefan
authors.initials: S
authors.lastname: Boresch
mesh_terms: D056004:Molecular Dynamics Simulation; D011789:Quantum Theory; D013499:Surface Properties