title: [Technological advances in single-cell genomic analyses].
abstract: The technological progress of the genomics has transformed life science research. The main objectives of genomics are sequencing of new genomes and genome-wide identification of the function and the interaction of genes and their products. The recently developed second generation or next generation sequencing platforms and DNA microarray technology are immensely important and powerful tools for functional genomic analyses. However, their application is limited by the requirement of sufficient amounts of high quality nucleic acid samples. Therefore, when only a single cell or a very small number of cells are available or are preferred, the whole genomic sequencing or functional genomic objectives cannot be achieved conventionally and require a robust amplification method. This review highlights DNA amplification technologies and summarizes the strategies currently utilized for whole genome sequencing of a single cell, with specific focus on studies investigating microorganisms; An outline for targeted re-sequencing enabling the analysis of larger genomes is also provided. Furthermore, the review presents the emerging functional genomic applications using next-generation sequencing or microarray analysis to examine genome-wide transcriptional profile, chromatin modification and other types of protein-DNA binding profile, and CpG methylation mapping in a single cell or a very low quantity of cells. The nature of these technologies and their prospects are also addressed.
authors.affiliation: Department of Genetics, Yale University School of Medicine, New Haven CT 06520-8005, USA. xinghua.pan@yale.edu
authors.forename: Xing-Hua
authors.initials: XH
authors.lastname: Pan
authors.forename: Hai-Ying
authors.initials: HY
authors.lastname: Zhu
authors.forename: Sadie L
authors.initials: SL
authors.lastname: Marjani
mesh_terms: D000818:Animals; D018899:CpG Islands; D019175:DNA Methylation; D023281:Genomics / Q000379:methods*; D006801:Humans; D021141:Nucleic Acid Amplification Techniques; D020411:Oligonucleotide Array Sequence Analysis; D017422:Sequence Analysis, DNA