title: First principles modeling of nonlinear incidence rates in seasonal epidemics.
abstract: In this paper we used a general stochastic processes framework to derive from first principles the incidence rate function that characterizes epidemic models. We investigate a particular case, the Liu-Hethcote-van den Driessche's (LHD) incidence rate function, which results from modeling the number of successful transmission encounters as a pure birth process. This derivation also takes into account heterogeneity in the population with regard to the per individual transmission probability. We adjusted a deterministic SIRS model with both the classical and the LHD incidence rate functions to time series of the number of children infected with syncytial respiratory virus in Banjul, Gambia and Turku, Finland. We also adjusted a deterministic SEIR model with both incidence rate functions to the famous measles data sets from the UK cities of London and Birmingham. Two lines of evidence supported our conclusion that the model with the LHD incidence rate may very well be a better description of the seasonal epidemic processes studied here. First, our model was repeatedly selected as best according to two different information criteria and two different likelihood formulations. The second line of evidence is qualitative in nature: contrary to what the SIRS model with classical incidence rate predicts, the solution of the deterministic SIRS model with LHD incidence rate will reach either the disease free equilibrium or the endemic equilibrium depending on the initial conditions. These findings along with computer intensive simulations of the models' Poincaré map with environmental stochasticity contributed to attain a clear separation of the roles of the environmental forcing and the mechanics of the disease transmission in shaping seasonal epidemics dynamics.
authors.affiliation: Department of Biology, University of Florida, Gainesville, Florida, United States of America. josemi@ufl.edu
authors.forename: José M
authors.initials: JM
authors.lastname: Ponciano
authors.forename: Marcos A
authors.initials: MA
authors.lastname: Capistrán
mesh_terms: D000465:Algorithms; D002648:Child; D015331:Cohort Studies; D019295:Computational Biology; D016208:Databases, Factual; D058872:Epidemics; D004812:Epidemiologic Methods; D005387:Finland; D005714:Gambia; D006801:Humans; D008457:Measles / Q000453:epidemiology; D015233:Models, Statistical; D017711:Nonlinear Dynamics; D012107:Research Design; D018357:Respiratory Syncytial Virus Infections / Q000453:epidemiology; D012621:Seasons; D013269:Stochastic Processes