title: Calculated vertical ionization energies of the common α-amino acids in the gas phase and in solution.
abstract: The vertical ionization energies of the low-lying conformers of the α-amino acids found in proteins have been calculated. Geometry optimizations were first performed at the B3LYP/6-311G(d,p) level of theory, and then reoptimized at the MP2/6-311G(d,p) level of theory. Vertical ionization energies were then computed by three methods, electron propagator in the partial third-order (P3) approximation, Outer-Valence-Green's Functions, and by evaluating the difference in the total energy between the cation radical and the neutral amino acid in the geometry of the neutral species. When available, the results are compared to the experimental vertical ionization energies. The vertical ionization energies calculated using the MP2/P3 method gave the best overall agreement with the experimental results. Next, the ionization energies in solution are calculated for the zwitterionic forms of the α-amino acids by using IEFPCM methods. To obtain the vertical ionization energy in solution, it is necessary to use the nonequilibrium polarizable continuum model (NEPCM), the results of which are reported here for the α-amino acids.
authors.affiliation: Department of Physics, Box 70652, East Tennessee State University, Johnson City, Tennessee 37614, United States. closed@etsu.edu
authors.forename: David M
authors.initials: DM
authors.lastname: Close
mesh_terms: D000596:Amino Acids / Q000737:chemistry*; D005740:Gases / Q000737:chemistry*; D008958:Models, Molecular; D012996:Solutions; D013816:Thermodynamics
chemical_list: D000596:Amino Acids; D005740:Gases; D012996:Solutions