title: ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
abstract: ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
  
  
  BACKGROUND
  ExpEdit is freely available on the web at http://www.caspur.it/ExpEdit/.
authors.affiliation: Dipartimento di Biochimica e Biologia Molecolare E. Quagliariello, Università di Bari, Bari, Italy.
authors.forename: Ernesto
authors.initials: E
authors.lastname: Picardi
authors.forename: Mattia
authors.initials: M
authors.lastname: D'Antonio
authors.forename: Danilo
authors.initials: D
authors.lastname: Carrabino
authors.forename: Tiziana
authors.initials: T
authors.lastname: Castrignanò
authors.forename: Graziano
authors.initials: G
authors.lastname: Pesole
mesh_terms: D019295:Computational Biology / Q000379:methods*; D023281:Genomics / Q000379:methods*; D006801:Humans; D020407:Internet; D017393:RNA Editing; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software