title: The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions.
abstract: Understanding the mechanisms by which organisms adapt to environmental conditions is a fundamental question for ecology and evolution. In this study, we evaluate changes in gene expression of a marine mollusc, the eastern oyster Crassostrea virginica, associated with the physico-chemical conditions and the levels of metals and other contaminants in their environment. The results indicate that transcript signatures can effectively disentangle the complex interactive gene expression responses to the environment and are also capable of disentangling the complex dynamic effects of environmental factors on gene expression. In this context, the mapping of environment to gene and gene to environment is reciprocal and mutually reinforcing. In general, the response of transcripts to the environment is driven by major factors known to affect oyster physiology such as temperature, pH, salinity, and dissolved oxygen, with pollutant levels playing a relatively small role, at least within the range of concentrations found in the studied oyster habitats. Further, the two environmental factors that dominate these effects (temperature and pH) interact in a dynamic and nonlinear fashion to impact gene expression. Transcriptomic data obtained in our study provide insights into the mechanisms of physiological responses to temperature and pH in oysters that are consistent with the known effects of these factors on physiological functions of ectotherms and indicate important linkages between transcriptomics and physiological outcomes. Should these linkages hold in further studies and in other organisms, they may provide a novel integrated approach for assessing the impacts of climate change, ocean acidification and anthropogenic contaminants on aquatic organisms via relatively inexpensive microarray platforms.
authors.affiliation: South Carolina Department of Natural Resources, Charleston, SC 29422-2559, USA. chapmanr@dnr.sc.gov
authors.forename: Robert W
authors.initials: RW
authors.lastname: Chapman
authors.forename: Annalaura
authors.initials: A
authors.lastname: Mancia
authors.forename: Marion
authors.initials: M
authors.lastname: Beal
authors.forename: Artur
authors.initials: A
authors.lastname: Veloso
authors.forename: Charles
authors.initials: C
authors.lastname: Rathburn
authors.forename: Anne
authors.initials: A
authors.lastname: Blair
authors.forename: A F
authors.initials: AF
authors.lastname: Holland
authors.forename: G W
authors.initials: GW
authors.lastname: Warr
authors.forename: Guy
authors.initials: G
authors.lastname: Didinato
authors.forename: Inna M
authors.initials: IM
authors.lastname: Sokolova
authors.forename: Edward F
authors.initials: EF
authors.lastname: Wirth
authors.forename: Edward
authors.initials: E
authors.lastname: Duffy
authors.forename: Denise
authors.initials: D
authors.lastname: Sanger
mesh_terms: D000222:Adaptation, Physiological; D000818:Animals; D016000:Cluster Analysis; D004777:Environment; D015870:Gene Expression; D020869:Gene Expression Profiling; D006801:Humans; D006863:Hydrogen-Ion Concentration; D046228:Microarray Analysis / Q000379:methods; D010125:Ostreidae / Q000235:genetics* / Q000502:physiology*; D012372:ROC Curve; D012623:Seawater; D013312:Stress, Physiological; D013696:Temperature