title: UV resonance Raman finds peptide bond-Arg side chain electronic interactions.
abstract: We measured the UV resonance Raman excitation profiles and Raman depolarization ratios of the arginine (Arg) vibrations of the amino acid monomer as well as Arg in the 21-residue predominantly alanine peptide AAAAA(AAARA)(3)A (AP) between 194 and 218 nm. Excitation within the π → π* peptide bond electronic transitions result in UVRR spectra dominated by amide peptide bond vibrations. The Raman cross sections and excitation profiles indicate that the Arg side chain electronic transitions mix with the AP peptide bond electronic transitions. The Arg Raman bands in AP exhibit Raman excitation profiles similar to those of the amide bands in AP which are conformation specific. These Arg excitation profiles distinctly differ from the Arg monomer. The Raman depolarization ratios of Arg in monomeric solution are quite simple with ρ = 0.33 indicating enhancement by a single electronic transition. In contrast, we see very complex depolarization ratios of Arg in AP that indicate that the Arg residues are resonance enhanced by multiple electronic transitions.
authors.affiliation: Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States.
authors.forename: Bhavya
authors.initials: B
authors.lastname: Sharma
authors.forename: Sanford A
authors.initials: SA
authors.lastname: Asher
mesh_terms: D000595:Amino Acid Sequence; D001120:Arginine / Q000737:chemistry*; D004583:Electrons; D008969:Molecular Sequence Data; D010455:Peptides / Q000737:chemistry*; D011789:Quantum Theory; D012996:Solutions / Q000737:chemistry; D013059:Spectrum Analysis, Raman
chemical_list: D010455:Peptides; D012996:Solutions; D001120:Arginine