title: Phylogenetic analysis of protein sequences based on distribution of length about common sub-string.
abstract: Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution of length about common sub-sequences between two sequences. We describe some applications of this method, which not only show the validity of the method, but also suggest a number of novel phylogenetic insights.
authors: School of Mathematical Sciences, Dalian University of Technology, 116024 Dalian, People's Republic of China. gschang@mail.neu.edu.cn
authors: Guisong
authors: G
authors: Chang
authors: Tianming
authors: T
authors: Wang
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D017934:Coronavirus / Q000145:classification* / Q000235:genetics; D006801:Humans; D008562:Membrane Glycoproteins / Q000737:chemistry / Q000235:genetics; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment / Q000379:methods*; D064370:Spike Glycoprotein, Coronavirus; D014168:Transferrin / Q000737:chemistry / Q000235:genetics; D014714:Vertebrates / Q000145:classification* / Q000235:genetics; D014759:Viral Envelope Proteins / Q000737:chemistry / Q000235:genetics
chemical_list: D008562:Membrane Glycoproteins; D064370:Spike Glycoprotein, Coronavirus; D014168:Transferrin; D014759:Viral Envelope Proteins