title: hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
abstract: hmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11 069 914 protein-DNA interactions. A web server provides interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell-type dependencies, and cross-sample variability of protein-DNA interactions.
  
  
  BACKGROUND
  http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl.
authors: Department of Biostatistics, The Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD 21205, USA.
authors: Li
authors: L
authors: Chen
authors: George
authors: G
authors: Wu
authors: Hongkai
authors: H
authors: Ji
mesh_terms: D000818:Animals; D047369:Chromatin Immunoprecipitation; D004247:DNA / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000378:metabolism; D030541:Databases, Genetic; D055106:Genome-Wide Association Study; D006801:Humans; D020407:Internet; D051379:Mice; D009369:Neoplasms / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis; D012984:Software
chemical_list: D004268:DNA-Binding Proteins; D004247:DNA