title: CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks.
abstract: CONCLUSIONS
  Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.
  
  
  BACKGROUND
  Via the Cytoscape plugin manager or http://bioinformatics.psb.ugent.be/software/details/CyClus3D.
authors.affiliation: Department of Information Technology, Ghent University - IBBT, Gaston Crommenlaan 8/201, B-9050 Gent, Belgium.
authors.forename: Pieter
authors.initials: P
authors.lastname: Audenaert
authors.forename: Thomas
authors.initials: T
authors.lastname: Van Parys
authors.forename: Florian
authors.initials: F
authors.lastname: Brondel
authors.forename: Mario
authors.initials: M
authors.lastname: Pickavet
authors.forename: Piet
authors.initials: P
authors.lastname: Demeester
authors.forename: Yves
authors.initials: Y
authors.lastname: Van de Peer
authors.forename: Tom
authors.initials: T
authors.lastname: Michoel
mesh_terms: D000465:Algorithms; D016000:Cluster Analysis; D053263:Gene Regulatory Networks; D008954:Models, Biological; D025941:Protein Interaction Mapping; D015398:Signal Transduction; D012984:Software