title: Automatic classification of sentences to support Evidence Based Medicine.
abstract: OBJECTIVE
  Given a set of pre-defined medical categories used in Evidence Based Medicine, we aim to automatically annotate sentences in medical abstracts with these labels.
  
  
  METHODS
  We constructed a corpus of 1,000 medical abstracts annotated by hand with specified medical categories (e.g. Intervention, Outcome). We explored the use of various features based on lexical, semantic, structural, and sequential information in the data, using Conditional Random Fields (CRF) for classification.
  
  
  RESULTS
  For the classification tasks over all labels, our systems achieved micro-averaged f-scores of 80.9% and 66.9% over datasets of structured and unstructured abstracts respectively, using sequential features. In labeling only the key sentences, our systems produced f-scores of 89.3% and 74.0% over structured and unstructured abstracts respectively, using the same sequential features. The results over an external dataset were lower (f-scores of 63.1% for all labels, and 83.8% for key sentences).
  
  
  CONCLUSIONS
  Of the features we used, the best for classifying any given sentence in an abstract were based on unigrams, section headings, and sequential information from preceding sentences. These features resulted in improved performance over a simple bag-of-words approach, and outperformed feature sets used in previous work.
authors.affiliation: NICTA VRL, The University of Melbourne, 3010, Australia.
authors.forename: Su Nam
authors.initials: SN
authors.lastname: Kim
authors.forename: David
authors.initials: D
authors.lastname: Martinez
authors.forename: Lawrence
authors.initials: L
authors.lastname: Cavedon
authors.forename: Lars
authors.initials: L
authors.lastname: Yencken
mesh_terms: D000043:Abstracting and Indexing / Q000379:methods*; D001330:Electronic Data Processing / Q000379:methods; D019317:Evidence-Based Medicine; D016247:Information Storage and Retrieval / Q000379:methods*; D009323:Natural Language Processing; D012660:Semantics