title: Development and evaluation of event-specific quantitative PCR method for genetically modified soybean A2704-12.
abstract: A novel real-time PCR-based analytical method was developed for the event-specific quantification of a genetically modified (GM) soybean event; A2704-12. During the plant transformation, DNA fragments derived from pUC19 plasmid were integrated in A2704-12, and the region was found to be A2704-12 specific. The pUC19-derived DNA sequences were used as primers for the specific detection of A2704-12. We first tried to construct a standard plasmid for A2704-12 quantification using pUC19. However, non-specific signals appeared with both qualitative and quantitative PCR analyses using the specific primers with pUC19 as a template, and we then constructed a plasmid using pBR322. The conversion factor (C(f)), which is required to calculate the amount of the genetically modified organism (GMO), was experimentally determined with two real-time PCR instruments, the Applied Biosystems 7900HT and the Applied Biosystems 7500. The determined C(f) values were both 0.98. The quantitative method was evaluated by means of blind tests in multi-laboratory trials using the two real-time PCR instruments. The limit of quantitation for the method was estimated to be 0.1%. The trueness and precision were evaluated as the bias and reproducibility of relative standard deviation (RSD(R)), and the determined bias and RSD(R) values for the method were each less than 20%. These results suggest that the developed method would be suitable for practical analyses for the detection and quantification of A2704-12.
authors.affiliation: Analytical Science Division, National Food Research Institute, National Agriculture and Food Research Organization, Ibaraki 305-8642, Japan.
authors.forename: Reona
authors.initials: R
authors.lastname: Takabatake
authors.forename: Hiroshi
authors.initials: H
authors.lastname: Akiyama
authors.forename: Kozue
authors.initials: K
authors.lastname: Sakata
authors.forename: Mari
authors.initials: M
authors.lastname: Onishi
authors.forename: Tomohiro
authors.initials: T
authors.lastname: Koiwa
authors.forename: Satoshi
authors.initials: S
authors.lastname: Futo
authors.forename: Yasutaka
authors.initials: Y
authors.lastname: Minegishi
authors.forename: Reiko
authors.initials: R
authors.lastname: Teshima
authors.forename: Junichi
authors.initials: J
authors.lastname: Mano
authors.forename: Satoshi
authors.initials: S
authors.lastname: Furui
authors.forename: Kazumi
authors.initials: K
authors.lastname: Kitta
mesh_terms: D001483:Base Sequence; D003199:Computer Systems; D018744:DNA, Plant / Q000032:analysis*; D030841:Food, Genetically Modified; D010957:Plasmids / Q000032:analysis; D016133:Polymerase Chain Reaction / Q000379:methods*; D013025:Glycine max / Q000235:genetics*
chemical_list: D018744:DNA, Plant