title: CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling.
abstract: CONCLUSIONS
  CytoModeler is an open-source Java application based on the Cytoscape platform. It integrates large-scale network analysis and quantitative modeling by combining omics analysis on the Cytoscape platform, access to deterministic and stochastic simulators, and static and dynamic network context visualizations of simulation results.
  
  
  BACKGROUND
  Implemented in Java, CytoModeler runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/cytomodeler/.
authors.affiliation: Program of Bioinformatics and Computational Biology, Iowa State University, Ames, IA 50011, USA. netscape@iastate.edu
authors.forename: Tian
authors.initials: T
authors.lastname: Xia
authors.forename: John
authors.initials: J
authors.lastname: Van Hemert
authors.forename: Julie A
authors.initials: JA
authors.lastname: Dickerson
mesh_terms: D003198:Computer Simulation; D008954:Models, Biological; D012984:Software; D049490:Systems Biology / Q000379:methods