title: OTUbase: an R infrastructure package for operational taxonomic unit data.
abstract: CONCLUSIONS
  OTUbase is an R package designed to facilitate the analysis of operational taxonomic unit (OTU) data and sequence classification (taxonomic) data. Currently there are programs that will cluster sequence data into OTUs and/or classify sequence data into known taxonomies. However, there is a need for software that can take the summarized output of these programs and organize it into easily accessed and manipulated formats. OTUbase provides this structure and organization within R, to allow researchers to easily manipulate the data with the rich library of R packages currently available for additional analysis.
  
  
  BACKGROUND
  OTUbase is an R package available through Bioconductor. It can be found at http://www.bioconductor.org/packages/release/bioc/html/OTUbase.html.
authors.affiliation: Department of Biological Sciences, University of Idaho, Moscow, ID 83843, USA.
authors.forename: Daniel
authors.initials: D
authors.lastname: Beck
authors.forename: Matt
authors.initials: M
authors.lastname: Settles
authors.forename: James A
authors.initials: JA
authors.lastname: Foster
mesh_terms: D002965:Classification / Q000379:methods; D016000:Cluster Analysis; D017422:Sequence Analysis, DNA; D012984:Software